RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 DNAJC9Q8WXX5 260 aa13.46□□□□□ -0.25
LDLR-203ENST00000535915 GORASP1Q9BQQ3 440 aa13.46□□□□□ -0.25
LDLR-203ENST00000535915 AP5M1Q9H0R1 490 aa13.46□□□□□ -0.25
LDLR-203ENST00000535915 CNGB3Q9NQW8 809 aa13.46□□□□□ -0.25
LDLR-203ENST00000535915 ZNF358Q9NW07 568 aa13.46□□□□□ -0.25
LDLR-203ENST00000535915 COPG2Q9UBF2 871 aa13.46□□□□□ -0.25
LDLR-203ENST00000535915 APOBEC2Q9Y235 224 aaKnown RBP13.46□□□□□ -0.25
LDLR-203ENST00000535915 IQCA1LA6NCM1 817 aa13.46□□□□□ -0.26
LDLR-203ENST00000535915 GLTPD2A6NH11 291 aa13.46□□□□□ -0.26
LDLR-203ENST00000535915 NCAM2O15394 837 aa13.46□□□□□ -0.26
LDLR-203ENST00000535915 MX2P20592 715 aa13.46□□□□□ -0.26
LDLR-203ENST00000535915 LHX1P48742 406 aa13.46□□□□□ -0.26
LDLR-203ENST00000535915 RAP1GDS1P52306 607 aa13.46□□□□□ -0.26
LDLR-203ENST00000535915 CACNA2D1P54289 1103 aa13.46□□□□□ -0.26
LDLR-203ENST00000535915 PPIDQ08752 370 aaKnown RBP13.46□□□□□ -0.26
LDLR-203ENST00000535915 SCAPQ12770 1279 aa13.46□□□□□ -0.26
LDLR-203ENST00000535915 MAP2K5Q13163 448 aa13.46□□□□□ -0.26
LDLR-203ENST00000535915 SEMA3BQ13214 749 aa13.46□□□□□ -0.26
LDLR-203ENST00000535915 SCUBE1Q8IWY4 988 aa13.46□□□□□ -0.26
LDLR-203ENST00000535915 EDEM1Q92611 657 aa13.46□□□□□ -0.26
LDLR-203ENST00000535915 RBBP8Q99708 897 aa13.46□□□□□ -0.26
LDLR-203ENST00000535915 THTPAQ9BU02 230 aa13.46□□□□□ -0.26
LDLR-203ENST00000535915 RAD54BQ9Y620 910 aa13.46□□□□□ -0.26
LDLR-203ENST00000535915 EIF4E1BA6NMX2 242 aaKnown RBP13.45□□□□□ -0.26
LDLR-203ENST00000535915 NVLO15381 856 aaKnown RBP13.45□□□□□ -0.26
LDLR-203ENST00000535915 ATP9BO43861 1147 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 LTFP02788 710 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 PRKCGP05129 697 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 F7P08709 466 aaPredicted RBP13.45□□□□□ -0.26
LDLR-203ENST00000535915 RALBP11234 206 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 GRK2P25098 689 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 SPRP35270 261 aaPredicted RBP13.45□□□□□ -0.26
LDLR-203ENST00000535915 CLCNKBP51801 687 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 SLC34A1Q06495 639 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 DNAL1Q4LDG9 190 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 SNX30Q5VWJ9 437 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 ZMIZ2Q8NF64 920 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 CLPTM1LQ96KA5 538 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 GAD1Q99259 594 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 AGAP2Q99490 1192 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 SYT17Q9BSW7 474 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 KATNAL1Q9BW62 490 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 TMEM30AQ9NV96 361 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 SLC38A7Q9NVC3 462 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 PNPOQ9NVS9 261 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 NMRK1Q9NWW6 199 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 ETAA1Q9NY74 926 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 TRPM7Q96QT4 1865 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 ENO4A6NNW6 628 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 C9IYK1 514 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 TBX10O75333 385 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 ZNF189O75820 626 aaPredicted RBP13.45□□□□□ -0.26
LDLR-203ENST00000535915 CIB2O75838 187 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 FAM163BP0C2L3 166 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 GNAT1P11488 350 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 ABL2P42684 1182 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 SERPINB8P50452 374 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 AFF1P51825 1210 aaKnown RBP13.45□□□□□ -0.26
LDLR-203ENST00000535915 GJA9P57773 515 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 ITGA9Q13797 1035 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 CCL14Q16627 93 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 MORN1Q5T089 497 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 SPRYD7Q5W111 196 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 CFAP61Q8NHU2 1237 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 AZIN2Q96A70 460 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 APOL2Q9BQE5 337 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 COLEC11Q9BWP8 271 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 STN1Q9H668 368 aaKnown RBP13.45□□□□□ -0.26
LDLR-203ENST00000535915 WDCPQ9H6R7 721 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 SORCS3Q9UPU3 1222 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 SNX10Q9Y5X0 201 aa13.45□□□□□ -0.26
LDLR-203ENST00000535915 TM7SF2O76062 418 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 USP1O94782 785 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 CPA3P15088 417 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 HCAR3P49019 387 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 ZBTB17Q13105 803 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 TUBB3Q13509 450 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 RBBP5Q15291 538 aaKnown RBP13.44□□□□□ -0.26
LDLR-203ENST00000535915 CCDC153Q494R4 210 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 HSP90AA5PQ58FG0 334 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 CERCAMQ5T4B2 595 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 C6orf163Q5TEZ5 329 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 CAPRIN2Q6IMN6 1127 aaKnown RBP13.44□□□□□ -0.26
LDLR-203ENST00000535915 FSTL4Q6MZW2 842 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 TMEM135Q86UB9 458 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 ULK2Q8IYT8 1036 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 TNS4Q8IZW8 715 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 TMEM86AQ8N2M4 240 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 MICAL1Q8TDZ2 1067 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 NRG4Q8WWG1 115 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 MFSD3Q96ES6 412 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 SORT1Q99523 831 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 TKTL2Q9H0I9 626 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 GBA3Q9H227 469 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 CASS4Q9NQ75 786 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 CPSF2Q9P2I0 782 aaKnown RBP13.44□□□□□ -0.26
LDLR-203ENST00000535915 STX18Q9P2W9 335 aaKnown RBP13.44□□□□□ -0.26
LDLR-203ENST00000535915 ADAM28Q9UKQ2 775 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 PLA2G4CQ9UP65 541 aa13.44□□□□□ -0.26
LDLR-203ENST00000535915 MEI4A8MW99 385 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms