RNA–Protein interactions for RNA: ENST00000533979.5

ATM-223, Transcript of ATM serine/threonine kinase, human

TSL 3

Gene ATM, Length 705 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATM-223	ENST00000533979	COPB1	P53618	953 aa	Known RBP	5.1	□□□□□ -1.59
ATM-223	ENST00000533979	ARF3	P61204	181 aa	Predicted RBP	5.1	□□□□□ -1.59
ATM-223	ENST00000533979	ARF1	P84077	181 aa	Known RBP	5.1	□□□□□ -1.59
ATM-223	ENST00000533979	PLCB4	Q15147	1175 aa		5.1	□□□□□ -1.59
ATM-223	ENST00000533979	TRIM71	Q2Q1W2	868 aa	Known RBP	5.1	□□□□□ -1.59
ATM-223	ENST00000533979	PLAG1	Q6DJT9	500 aa		5.1	□□□□□ -1.59
ATM-223	ENST00000533979	NFRKB	Q6P4R8	1299 aa		5.1	□□□□□ -1.59
ATM-223	ENST00000533979	TMTC3	Q6ZXV5	915 aa		5.1	□□□□□ -1.59
ATM-223	ENST00000533979	CHD1L	Q86WJ1	897 aa		5.1	□□□□□ -1.59
ATM-223	ENST00000533979	KRT73	Q86Y46	540 aa		5.1	□□□□□ -1.59
ATM-223	ENST00000533979	OR6Y1	Q8NGX8	325 aa		5.1	□□□□□ -1.59
ATM-223	ENST00000533979	CEP70	Q8NHQ1	597 aa		5.1	□□□□□ -1.59
ATM-223	ENST00000533979	ATP6V1E2	Q96A05	226 aa		5.1	□□□□□ -1.59
ATM-223	ENST00000533979	NSUN4	Q96CB9	384 aa	Known RBP	5.1	□□□□□ -1.59
ATM-223	ENST00000533979	ZDHHC12	Q96GR4	267 aa		5.1	□□□□□ -1.59
ATM-223	ENST00000533979	RADIL	Q96JH8	1075 aa		5.1	□□□□□ -1.59
ATM-223	ENST00000533979	BAG1	Q99933	345 aa	Predicted RBP	5.1	□□□□□ -1.59
ATM-223	ENST00000533979	FAM118B	Q9BPY3	351 aa		5.1	□□□□□ -1.59
ATM-223	ENST00000533979	SLF1	Q9BQI6	1058 aa		5.1	□□□□□ -1.59
ATM-223	ENST00000533979	ARHGAP39	Q9C0H5	1083 aa		5.1	□□□□□ -1.59
ATM-223	ENST00000533979	TP63	Q9H3D4	680 aa	Predicted RBP	5.1	□□□□□ -1.59
ATM-223	ENST00000533979	TUBA8	Q9NY65	449 aa	Predicted RBP	5.1	□□□□□ -1.59
ATM-223	ENST00000533979	PI4KB	Q9UBF8	816 aa		5.1	□□□□□ -1.59
ATM-223	ENST00000533979	CFDP1	Q9UEE9	299 aa	Predicted RBP	5.1	□□□□□ -1.59
ATM-223	ENST00000533979	TBX20	Q9UMR3	447 aa		5.1	□□□□□ -1.59
ATM-223	ENST00000533979	CNPY2	Q9Y2B0	182 aa		5.1	□□□□□ -1.59
ATM-223	ENST00000533979	KIF21B	O75037	1637 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979		A8MVJ9	347 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	KCNU1	A8MYU2	1149 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	TMEM232	C9JQI7	657 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	RAB27B	O00194	218 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	GCAT	O75600	419 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	BCAR3	O75815	825 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	SCGB1D1	O95968	90 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	CNP	P09543	421 aa	Known RBP	5.09	□□□□□ -1.59
ATM-223	ENST00000533979	ATF7	P17544	494 aa	Predicted RBP	5.09	□□□□□ -1.59
ATM-223	ENST00000533979	ACVR2A	P27037	513 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	CTNNA1	P35221	906 aa	Known RBP	5.09	□□□□□ -1.59
ATM-223	ENST00000533979	MMP13	P45452	471 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	DIO1	P49895	249 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	MTHFS	P49914	203 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	CCR9	P51686	369 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	CFHR3	Q02985	330 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	KLF9	Q13886	244 aa	Predicted RBP	5.09	□□□□□ -1.59
ATM-223	ENST00000533979	SLC10A5	Q5PT55	438 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	RAP1GAP2	Q684P5	730 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	SLC30A6	Q6NXT4	461 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	CRTC1	Q6UUV9	634 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	KRT74	Q7RTS7	529 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	ANKS1B	Q7Z6G8	1248 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	NGEF	Q8N5V2	710 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	LINC01465	Q8N7H1	131 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	C12orf76	Q8N812	135 aa	Predicted RBP	5.09	□□□□□ -1.59
ATM-223	ENST00000533979	CCDC191	Q8NCU4	936 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	CSGALNACT1	Q8TDX6	532 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	MMS19	Q96T76	1030 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	TXLNGY	Q9BZA5	131 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	ZCWPW1	Q9H0M4	648 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	PCDHAC1	Q9H158	963 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	ZNF112	Q9UJU3	913 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	ACAD8	Q9UKU7	415 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	5.09	□□□□□ -1.59
ATM-223	ENST00000533979	DTNA	Q9Y4J8	743 aa		5.09	□□□□□ -1.59
ATM-223	ENST00000533979	PLB1	Q6P1J6	1458 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	FGD5	Q6ZNL6	1462 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	ZNF521	Q96K83	1311 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	PCDH17	O14917	1159 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	DSCR3	O14972	297 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	SPTLC2	O15270	562 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	TOP3B	O95985	862 aa	Known RBP	5.08	□□□□□ -1.6
ATM-223	ENST00000533979	APEH	P13798	732 aa	Known RBP	5.08	□□□□□ -1.6
ATM-223	ENST00000533979	HGF	P14210	728 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	PECAM1	P16284	738 aa	Predicted RBP	5.08	□□□□□ -1.6
ATM-223	ENST00000533979	ATP5F1	P24539	256 aa	Predicted RBP	5.08	□□□□□ -1.6
ATM-223	ENST00000533979	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	5.08	□□□□□ -1.6
ATM-223	ENST00000533979	BECN1	Q14457	450 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	SMAD1	Q15797	465 aa	Known RBP	5.08	□□□□□ -1.6
ATM-223	ENST00000533979	ETFDH	Q16134	617 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	SLC5A9	Q2M3M2	681 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	HECTD3	Q5T447	861 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	SNX30	Q5VWJ9	437 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	ATG16L1	Q676U5	607 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	SLC2A7	Q6PXP3	512 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	TMEM57	Q8N5G2	664 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	RSC1A1	Q92681	617 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	FCRL4	Q96PJ5	515 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	TRAPPC9	Q96Q05	1148 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	HIST1H2AA	Q96QV6	131 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	REEP2	Q9BRK0	252 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	ABHD16B	Q9H3Z7	469 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	ACAD9	Q9H845	621 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	G6PC2	Q9NQR9	355 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	PDGFC	Q9NRA1	345 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	STEAP1	Q9UHE8	339 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	CA14	Q9ULX7	337 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	MAFF	Q9ULX9	164 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979	CYP46A1	Q9Y6A2	500 aa		5.08	□□□□□ -1.6
ATM-223	ENST00000533979		H7C0S8	307 aa		5.07	□□□□□ -1.6
ATM-223	ENST00000533979	AGPS	O00116	658 aa		5.07	□□□□□ -1.6
ATM-223	ENST00000533979	DNPH1	O43598	174 aa		5.07	□□□□□ -1.6

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