RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 VPS4AQ9UN37 437 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 SMC3Q9UQE7 1217 aa3.57□□□□□ -1.84
CD44-229ENST00000528672 MAST3O60307 1309 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 hCG_1807616A0A1W2PRN6 198 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 PABPN1LA6NDY0 278 aaKnown RBP3.56□□□□□ -1.84
CD44-229ENST00000528672 ZNF213O14771 459 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 PRAMEF2O60811 474 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 TSPAN9O75954 239 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 IGHDP01880 384 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 GCP02774 474 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 DNTTP04053 509 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 CYP3A4P08684 503 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 LAMP2P13473 410 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 ACP5P13686 325 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 PORP16435 677 aaPredicted RBP3.56□□□□□ -1.84
CD44-229ENST00000528672 ZNF37AP17032 561 aaPredicted RBP3.56□□□□□ -1.84
CD44-229ENST00000528672 ANP32AP39687 249 aaKnown RBP3.56□□□□□ -1.84
CD44-229ENST00000528672 RARSP54136 660 aaKnown RBP3.56□□□□□ -1.84
CD44-229ENST00000528672 E2F1Q01094 437 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 TLE3Q04726 772 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 PTP4A2Q12974 167 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 CHAF1BQ13112 559 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 THOC5Q13769 683 aaKnown RBP3.56□□□□□ -1.84
CD44-229ENST00000528672 NAA25Q14CX7 972 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 CDC37Q16543 378 aaPredicted RBP3.56□□□□□ -1.84
CD44-229ENST00000528672 SMN1Q16637 294 aaKnown RBP3.56□□□□□ -1.84
CD44-229ENST00000528672 RUNDC3AQ59EK9 446 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 Q6ZNX1 250 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 DTX2Q86UW9 622 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 LNX2Q8N448 690 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 ZNF366Q8N895 744 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 TBC1D5Q92609 795 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 SH3KBP1Q96B97 665 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 RSPRY1Q96DX4 576 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 ITPAQ9BY32 194 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 SEZ6LQ9BYH1 1024 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 CLPBQ9H078 707 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 IKZF4Q9H2S9 585 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 MROH8Q9H579 483 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 BEX4Q9NWD9 120 aaPredicted RBP3.56□□□□□ -1.84
CD44-229ENST00000528672 DLL3Q9NYJ7 618 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 FOXJ2Q9P0K8 574 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 NFKBIL1Q9UBC1 381 aaPredicted RBP3.56□□□□□ -1.84
CD44-229ENST00000528672 SLC25A10Q9UBX3 287 aaPredicted RBP3.56□□□□□ -1.84
CD44-229ENST00000528672 ZNF215Q9UL58 517 aaPredicted RBP3.56□□□□□ -1.84
CD44-229ENST00000528672 DMRT1Q9Y5R6 373 aa3.56□□□□□ -1.84
CD44-229ENST00000528672 CCDC187A0A096LP49 1063 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 GOLGA6L10A0A0M3HER8 536 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 GAGE10A6NGK3 116 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 TMEM232C9JQI7 657 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 PTGES3LE9PB15 166 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 H0YIZ8 118 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 SLC16A3O15427 465 aaKnown RBP3.55□□□□□ -1.84
CD44-229ENST00000528672 KAT7O95251 611 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 CCNDBP1O95273 360 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 MLYCDO95822 493 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 SPARCP09486 303 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 EBLN1P0CF75 366 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 CREB1P16220 341 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 DRD4P21917 467 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 PROZP22891 400 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 ADRA1DP25100 572 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 NFKBIAP25963 317 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 CYP2C18P33260 490 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 IGHMBP2P38935 993 aaKnown RBP3.55□□□□□ -1.84
CD44-229ENST00000528672 RGS2P41220 211 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 PDE1AP54750 535 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 MC1RQ01726 317 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 CREB5Q02930 508 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 COL10A1Q03692 680 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 ACVR2BQ13705 512 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 RNASE12Q5GAN4 147 aaKnown RBP3.55□□□□□ -1.84
CD44-229ENST00000528672 ZNF362Q5T0B9 420 aaPredicted RBP3.55□□□□□ -1.84
CD44-229ENST00000528672 TAF3Q5VWG9 929 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 WDR93Q6P2C0 686 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 ACSM6Q6P461 480 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 C16orf89Q6UX73 402 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 KIAA1324Q6UXG2 1013 aaKnown RBP3.55□□□□□ -1.84
CD44-229ENST00000528672 NAPRTQ6XQN6 538 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 IKBIPQ70UQ0 350 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 AMIGO2Q86SJ2 522 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 ZSCAN30Q86W11 494 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 RASAL3Q86YV0 1011 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 TTC39CQ8N584 583 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 TNIP2Q8NFZ5 429 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 RFWD2Q8NHY2 731 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 CLEC4CQ8WTT0 213 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 RUFY2Q8WXA3 655 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 SOCS4Q8WXH5 440 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 ATP2A3Q93084 1043 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 ELP4Q96EB1 424 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 SAAL1Q96ER3 474 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 CALML4Q96GE6 196 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 ASB2Q96Q27 587 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 MPHOSPH8Q99549 860 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 SLF1Q9BQI6 1058 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 FTOQ9C0B1 505 aaKnown RBP eCLIP3.55□□□□□ -1.84
CD44-229ENST00000528672 RANBP17Q9H2T7 1088 aaKnown RBP3.55□□□□□ -1.84
CD44-229ENST00000528672 CXorf56Q9H5V9 222 aa3.55□□□□□ -1.84
CD44-229ENST00000528672 RETREG1Q9H6L5 497 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms