RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 RNF43Q68DV7 783 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 TWF2Q6IBS0 349 aaKnown RBP4.39□□□□□ -1.71
CD44-226ENST00000527889 CCDC70Q6NSX1 233 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 SLC27A1Q6PCB7 646 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 CEP68Q76N32 757 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 SRLQ86TD4 932 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 RSPH3Q86UC2 560 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 SLC47A2Q86VL8 602 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 VPS36Q86VN1 386 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 SESTD1Q86VW0 696 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 PALB2Q86YC2 1186 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 ZZZ3Q8IYH5 903 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 FAM71AQ8IYT1 594 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 NDUFAF2Q8N183 169 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 MIER2Q8N344 545 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 SLC35F6Q8N357 371 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 LPPQ93052 612 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 C18orf25Q96B23 403 aaPredicted RBP4.39□□□□□ -1.71
CD44-226ENST00000527889 TNIP3Q96KP6 325 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 GLT1D1Q96MS3 346 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 DEFB118Q96PH6 123 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 AGPAT1Q99943 283 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 SEZ6LQ9BYH1 1024 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 IFIH1Q9BYX4 1025 aaKnown RBP4.39□□□□□ -1.71
CD44-226ENST00000527889 TRIM6Q9C030 488 aaPredicted RBP4.39□□□□□ -1.71
CD44-226ENST00000527889 AGO3Q9H9G7 860 aaKnown RBP4.39□□□□□ -1.71
CD44-226ENST00000527889 TMEM51Q9NW97 253 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 ERVK13-1Q9NX77 482 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 DPP3Q9NY33 737 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 TAS2R14Q9NYV8 317 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 DNAI1Q9UI46 699 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 TUBD1Q9UJT1 453 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 ACAD8Q9UKU7 415 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 NENFQ9UMX5 172 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 IPPQ9Y573 584 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 PAXBP1Q9Y5B6 917 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 PCDHB4Q9Y5E5 795 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 BZW2Q9Y6E2 419 aaKnown RBP4.39□□□□□ -1.71
CD44-226ENST00000527889 U3KQE9 123 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 X6R8D5 127 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 ZNF318Q5VUA4 2279 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 MYO10Q9HD67 2058 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 PIKFYVEQ9Y2I7 2098 aa4.39□□□□□ -1.71
CD44-226ENST00000527889 NYNRINQ9P2P1 1898 aaKnown RBP4.39□□□□□ -1.71
CD44-226ENST00000527889 DOCK8Q8NF50 2099 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 ABHD14A-ACY1A0A1B0GW23 586 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 MACROD2A1Z1Q3 448 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 ERICH4A6NGS2 130 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 CYSRT1A8MQ03 144 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 KIF2AO00139 706 aaPredicted RBP4.38□□□□□ -1.71
CD44-226ENST00000527889 PJA2O43164 708 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 BUB1O43683 1085 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 MGEA5O60502 916 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 ZC3H11AO75152 810 aaKnown RBP eCLIP4.38□□□□□ -1.71
CD44-226ENST00000527889 NDUFS2O75306 463 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 RNASEH2AO75792 299 aaKnown RBP4.38□□□□□ -1.71
CD44-226ENST00000527889 TUSC2O75896 110 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 IGLV1-40P01703 118 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 MMEP08473 750 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 WEE2P0C1S8 567 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 TMEM253P0C7T8 217 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 CCDC172P0C7W6 258 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 OSMP13725 252 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 CD58P19256 250 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 AXLP30530 894 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 AP3M2P53677 418 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 GALCP54803 685 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 CDH8P55286 799 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 FMO1Q01740 532 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 GCNT1Q02742 428 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 TEKQ02763 1124 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 LPIN1Q14693 890 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 LLGL1Q15334 1064 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 TAF11Q15544 211 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 KYAT1Q16773 422 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 LONRF1Q17RB8 773 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 CYP27C1Q4G0S4 372 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 HSF5Q4G112 596 aaPredicted RBP4.38□□□□□ -1.71
CD44-226ENST00000527889 FBXO47Q5MNV8 452 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 ALKBH5Q6P6C2 394 aaKnown RBP4.38□□□□□ -1.71
CD44-226ENST00000527889 C1orf228Q6PIY5 440 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 TMEM270Q6UE05 265 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 KRT77Q7Z794 578 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 ZAR1Q86SH2 424 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 CXorf67Q86X51 503 aaPredicted RBP4.38□□□□□ -1.71
CD44-226ENST00000527889 ZDHHC13Q8IUH4 622 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 NAT16Q8N8M0 369 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 RNF169Q8NCN4 708 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 ARRDC4Q8NCT1 418 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 FAM156AQ8NDB6 213 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 KIF18AQ8NI77 898 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 SLC30A5Q8TAD4 765 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 PPP1R35Q8TAP8 253 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 PIP4K2CQ8TBX8 421 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 HPDLQ96IR7 371 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 MPP4Q96JB8 637 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 C16orf92Q96LL3 132 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 ZMAT2Q96NC0 199 aaKnown RBP4.38□□□□□ -1.71
CD44-226ENST00000527889 SLC2A13Q96QE2 648 aa4.38□□□□□ -1.71
CD44-226ENST00000527889 PCDHB18PQ96TA0 734 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms