RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	ADIPOR2	Q86V24	386 aa		21.33	■■□□□ 1.01
CD44-222	ENST00000526025	MAP7D3	Q8IWC1	876 aa		21.33	■■□□□ 1.01
CD44-222	ENST00000526025	SYCE1	Q8N0S2	351 aa		21.33	■■□□□ 1.01
CD44-222	ENST00000526025	UCMA	Q8WVF2	138 aa		21.33	■■□□□ 1.01
CD44-222	ENST00000526025	HSPH1	Q92598	858 aa		21.33	■■□□□ 1.01
CD44-222	ENST00000526025	TTC17	Q96AE7	1141 aa		21.33	■■□□□ 1.01
CD44-222	ENST00000526025	PCDH18	Q9HCL0	1135 aa		21.33	■■□□□ 1.01
CD44-222	ENST00000526025	ELOVL2	Q9NXB9	296 aa		21.33	■■□□□ 1.01
CD44-222	ENST00000526025	DDX56	Q9NY93	547 aa	Known RBP	21.33	■■□□□ 1.01
CD44-222	ENST00000526025	NUP205	Q92621	2012 aa		21.33	■■□□□ 1
CD44-222	ENST00000526025		A0A0U1RQJ8	604 aa		21.32	■■□□□ 1
CD44-222	ENST00000526025	CXorf51A	A0A1B0GTR3	108 aa		21.32	■■□□□ 1
CD44-222	ENST00000526025	GRID2IP	A4D2P6	1211 aa		21.32	■■□□□ 1
CD44-222	ENST00000526025	PRRT4	C9JH25	899 aa		21.32	■■□□□ 1
CD44-222	ENST00000526025	ASL	P04424	464 aa		21.32	■■□□□ 1
CD44-222	ENST00000526025	RHOC	P08134	193 aa		21.32	■■□□□ 1
CD44-222	ENST00000526025	HNRNPL	P14866	589 aa	Known RBP eCLIP	21.32	■■□□□ 1
CD44-222	ENST00000526025	ETFB	P38117	255 aa		21.32	■■□□□ 1
CD44-222	ENST00000526025	DPYS	Q14117	519 aa		21.32	■■□□□ 1
CD44-222	ENST00000526025	PLEKHG6	Q3KR16	790 aa		21.32	■■□□□ 1
CD44-222	ENST00000526025	PPP6R3	Q5H9R7	873 aa	Predicted RBP	21.32	■■□□□ 1
CD44-222	ENST00000526025	TRMT11	Q7Z4G4	463 aa	Known RBP	21.32	■■□□□ 1
CD44-222	ENST00000526025	TFAP2D	Q7Z6R9	452 aa		21.32	■■□□□ 1
CD44-222	ENST00000526025	KIAA1524	Q8TCG1	905 aa		21.32	■■□□□ 1
CD44-222	ENST00000526025	USP33	Q8TEY7	942 aa		21.32	■■□□□ 1
CD44-222	ENST00000526025	ATRIP	Q8WXE1	791 aa		21.32	■■□□□ 1
CD44-222	ENST00000526025	ZNF670	Q9BS34	389 aa		21.32	■■□□□ 1
CD44-222	ENST00000526025	CWC15	Q9P013	229 aa	Known RBP	21.32	■■□□□ 1
CD44-222	ENST00000526025	TRIM10	Q9UDY6	481 aa		21.32	■■□□□ 1
CD44-222	ENST00000526025	OR51B4	Q9Y5P0	310 aa		21.32	■■□□□ 1
CD44-222	ENST00000526025	MACROD2	A1Z1Q3	448 aa		21.31	■■□□□ 1
CD44-222	ENST00000526025	FAM86C2P	A6NEL3	165 aa		21.31	■■□□□ 1
CD44-222	ENST00000526025	ATG13	O75143	517 aa		21.31	■■□□□ 1
CD44-222	ENST00000526025	RNF40	O75150	1001 aa		21.31	■■□□□ 1
CD44-222	ENST00000526025	ATP5B	P06576	529 aa	Known RBP	21.31	■■□□□ 1
CD44-222	ENST00000526025	GOT1	P17174	413 aa		21.31	■■□□□ 1
CD44-222	ENST00000526025	CSK	P41240	450 aa		21.31	■■□□□ 1
CD44-222	ENST00000526025	VASP	P50552	380 aa	Predicted RBP	21.31	■■□□□ 1
CD44-222	ENST00000526025	CDH6	P55285	790 aa		21.31	■■□□□ 1
CD44-222	ENST00000526025	SULT2A1	Q06520	285 aa		21.31	■■□□□ 1
CD44-222	ENST00000526025	KRT81	Q14533	505 aa		21.31	■■□□□ 1
CD44-222	ENST00000526025	FUT11	Q495W5	492 aa		21.31	■■□□□ 1
CD44-222	ENST00000526025	PITRM1	Q5JRX3	1037 aa		21.31	■■□□□ 1
CD44-222	ENST00000526025	TMEM215	Q68D42	235 aa		21.31	■■□□□ 1
CD44-222	ENST00000526025	MBLAC2	Q68D91	279 aa		21.31	■■□□□ 1
CD44-222	ENST00000526025	UMODL1-AS1	Q8N2C9	162 aa		21.31	■■□□□ 1
CD44-222	ENST00000526025	KDM1B	Q8NB78	822 aa		21.31	■■□□□ 1
CD44-222	ENST00000526025	ACD	Q96AP0	544 aa		21.31	■■□□□ 1
CD44-222	ENST00000526025	ALG14	Q96F25	216 aa		21.31	■■□□□ 1
CD44-222	ENST00000526025	FEM1A	Q9BSK4	669 aa		21.31	■■□□□ 1
CD44-222	ENST00000526025	RBM12	Q9NTZ6	932 aa	Known RBP	21.31	■■□□□ 1
CD44-222	ENST00000526025	INTS6	Q9UL03	887 aa	Known RBP	21.31	■■□□□ 1
CD44-222	ENST00000526025	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	21.31	■■□□□ 1
CD44-222	ENST00000526025	CKAP5	Q14008	2032 aa		21.31	■■□□□ 1
CD44-222	ENST00000526025	PI15	O43692	258 aa		21.3	■■□□□ 1
CD44-222	ENST00000526025	DCN	P07585	359 aa	Known RBP	21.3	■■□□□ 1
CD44-222	ENST00000526025	DLD	P09622	509 aa	Known RBP	21.3	■■□□□ 1
CD44-222	ENST00000526025	POLR2E	P19388	210 aa	Known RBP	21.3	■■□□□ 1
CD44-222	ENST00000526025	YBEY	P58557	167 aa	Predicted RBP	21.3	■■□□□ 1
CD44-222	ENST00000526025	DPYSL3	Q14195	570 aa		21.3	■■□□□ 1
CD44-222	ENST00000526025	SFTPA1	Q8IWL2	248 aa		21.3	■■□□□ 1
CD44-222	ENST00000526025	SPEM1	Q8N4L4	309 aa		21.3	■■□□□ 1
CD44-222	ENST00000526025	TMEM105	Q8N8V8	129 aa		21.3	■■□□□ 1
CD44-222	ENST00000526025	KCTD6	Q8NC69	237 aa		21.3	■■□□□ 1
CD44-222	ENST00000526025	FAF2	Q96CS3	445 aa		21.3	■■□□□ 1
CD44-222	ENST00000526025	CSPG4P5	Q96PW8	444 aa		21.3	■■□□□ 1
CD44-222	ENST00000526025	MAGEH1	Q9H213	219 aa		21.3	■■□□□ 1
CD44-222	ENST00000526025	PRDM16	Q9HAZ2	1276 aa		21.3	■■□□□ 1
CD44-222	ENST00000526025	THAP10	Q9P2Z0	257 aa	Predicted RBP	21.3	■■□□□ 1
CD44-222	ENST00000526025	DAPK3	O43293	454 aa		21.29	■■□□□ 1
CD44-222	ENST00000526025	ZSCAN12	O43309	604 aa		21.29	■■□□□ 1
CD44-222	ENST00000526025	CTNNA2	P26232	953 aa		21.29	■■□□□ 1
CD44-222	ENST00000526025	AVPR2	P30518	371 aa		21.29	■■□□□ 1
CD44-222	ENST00000526025	CTNNA1	P35221	906 aa	Known RBP	21.29	■■□□□ 1
CD44-222	ENST00000526025	GNA12	Q03113	381 aa		21.29	■■□□□ 1
CD44-222	ENST00000526025	ENPP2	Q13822	863 aa		21.29	■■□□□ 1
CD44-222	ENST00000526025	ATP13A4	Q4VNC1	1196 aa		21.29	■■□□□ 1
CD44-222	ENST00000526025	RNF219	Q5W0B1	726 aa	Predicted RBP	21.29	■■□□□ 1
CD44-222	ENST00000526025	KATNAL2	Q8IYT4	538 aa		21.29	■■□□□ 1
CD44-222	ENST00000526025	LZTR1	Q8N653	840 aa		21.29	■■□□□ 1
CD44-222	ENST00000526025	ZNF513	Q8N8E2	541 aa	Predicted RBP	21.29	■■□□□ 1
CD44-222	ENST00000526025	DCAF4L2	Q8NA75	395 aa		21.29	■■□□□ 1
CD44-222	ENST00000526025	OR52K2	Q8NGK3	314 aa		21.29	■■□□□ 1
CD44-222	ENST00000526025	ZNF830	Q96NB3	372 aa	Predicted RBP	21.29	■■□□□ 1
CD44-222	ENST00000526025	GOLPH3	Q9H4A6	298 aa		21.29	■■□□□ 1
CD44-222	ENST00000526025	HCN2	Q9UL51	889 aa		21.29	■■□□□ 1
CD44-222	ENST00000526025	GUCA1B	Q9UMX6	200 aa		21.29	■■□□□ 1
CD44-222	ENST00000526025	HYOU1	Q9Y4L1	999 aa		21.29	■■□□□ 1
CD44-222	ENST00000526025	CACNA1I	Q9P0X4	2223 aa		21.28	■■□□□ 1
CD44-222	ENST00000526025	CCDC66	A2RUB6	948 aa		21.28	■■□□□ 1
CD44-222	ENST00000526025	RAMP2	O60895	175 aa		21.28	■■□□□ 1
CD44-222	ENST00000526025	PALM	O75781	387 aa		21.28	■■□□□ 1
CD44-222	ENST00000526025	PAPSS2	O95340	614 aa	Predicted RBP	21.28	■■□□□ 1
CD44-222	ENST00000526025	SRPRA	P08240	638 aa	Known RBP	21.28	■■□□□ 1
CD44-222	ENST00000526025	ERCC2	P18074	760 aa		21.28	■■□□□ 1
CD44-222	ENST00000526025	KDELR1	P24390	212 aa		21.28	■■□□□ 1
CD44-222	ENST00000526025	IL4R	P24394	825 aa		21.28	■■□□□ 1
CD44-222	ENST00000526025	MZF1	P28698	734 aa	Predicted RBP	21.28	■■□□□ 1
CD44-222	ENST00000526025	GJC1	P36383	396 aa		21.28	■■□□□ 1
CD44-222	ENST00000526025	NDST2	P52849	883 aa		21.28	■■□□□ 1

Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms