RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 C17orf80Q9BSJ5 609 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 PNPOQ9NVS9 261 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 ZNF541Q9H0D2 1346 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 KLHL33A6NCF5 533 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 B4GALT4O60513 344 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 ITGA2BP08514 1039 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 BRCC3P46736 316 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 GTF2H3Q13889 308 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 GRTP1Q5TC63 336 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 RNF43Q68DV7 783 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 ELMOD1Q8N336 334 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 CARNMT1Q8N4J0 409 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 EZH1Q92800 747 aaPredicted RBP11.93□□□□□ -0.5
SYNPO-204ENST00000519664 NMRK2Q9NPI5 230 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 SAR1AQ9NR31 198 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 GID8Q9NWU2 228 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 SYBUQ9NX95 663 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 VPS28Q9UK41 221 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 COQ4Q9Y3A0 265 aa11.93□□□□□ -0.5
SYNPO-204ENST00000519664 DPYSL4O14531 572 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 ZSCAN9O15535 394 aaPredicted RBP11.92□□□□□ -0.5
SYNPO-204ENST00000519664 CILPO75339 1184 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 DAB2P98082 770 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 PRKAA1Q13131 559 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 MFSD5Q6N075 450 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 TTC33Q6PID6 262 aaPredicted RBP11.92□□□□□ -0.5
SYNPO-204ENST00000519664 DDX53Q86TM3 631 aaKnown RBP11.92□□□□□ -0.5
SYNPO-204ENST00000519664 SLC41A1Q8IVJ1 513 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 SLC4A11Q8NBS3 891 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 LPCAT1Q8NF37 534 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 KCTD4Q8WVF5 259 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 LRRC39Q96DD0 335 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 EXOC2Q96KP1 924 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 FAM192AQ9GZU8 254 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 MPP6Q9NZW5 540 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 CACNG4Q9UBN1 327 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 SFMBT1Q9UHJ3 866 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 CYP1A1P04798 512 aaPredicted RBP11.92□□□□□ -0.5
SYNPO-204ENST00000519664 HNRNPLP14866 589 aaKnown RBP eCLIP11.92□□□□□ -0.5
SYNPO-204ENST00000519664 MAP4P27816 1152 aaKnown RBP11.92□□□□□ -0.5
SYNPO-204ENST00000519664 RGS4P49798 205 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 RENBPP51606 427 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 GAD2Q05329 585 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 OTUD3Q5T2D3 398 aaPredicted RBP11.92□□□□□ -0.5
SYNPO-204ENST00000519664 CWF19L1Q69YN2 538 aaKnown RBP11.92□□□□□ -0.5
SYNPO-204ENST00000519664 SLC39A4Q6P5W5 647 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 ZBTB49Q6ZSB9 765 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 GDPD5Q8WTR4 605 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 MAML3Q96JK9 1138 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 HSFY1Q96LI6 401 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 CPNE1Q99829 537 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 EIF2AQ9BY44 585 aaKnown RBP11.92□□□□□ -0.5
SYNPO-204ENST00000519664 COPS7BQ9H9Q2 264 aaPredicted RBP11.92□□□□□ -0.5
SYNPO-204ENST00000519664 RGS18Q9NS28 235 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 WWOXQ9NZC7 414 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 PKD2L2Q9NZM6 624 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 LRCH1Q9Y2L9 728 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 MAFBQ9Y5Q3 323 aaPredicted RBP11.92□□□□□ -0.5
SYNPO-204ENST00000519664 PSMG1O95456 288 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 SERPINF2P08697 491 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 F7P08709 466 aaPredicted RBP11.92□□□□□ -0.5
SYNPO-204ENST00000519664 FGFR3P22607 806 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 NFYCQ13952 458 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 NOMO1Q15155 1222 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 IQSEC1Q6DN90 963 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 TIGD7Q6NT04 549 aaPredicted RBP11.92□□□□□ -0.5
SYNPO-204ENST00000519664 IRGCQ6NXR0 463 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 KYAT3Q6YP21 454 aaKnown RBP11.92□□□□□ -0.5
SYNPO-204ENST00000519664 UNC93AQ86WB7 457 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 C10orf107Q8IVU9 208 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 SNX31Q8N9S9 440 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 TMEM169Q96HH4 297 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 UBXN6Q9BZV1 441 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 KLHL4Q9C0H6 718 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 DPEP3Q9H4B8 488 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 MID1IP1Q9NPA3 183 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 KCNK4Q9NYG8 393 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 LSM7Q9UK45 103 aaKnown RBP11.92□□□□□ -0.5
SYNPO-204ENST00000519664 SATB2Q9UPW6 733 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 TELO2Q9Y4R8 837 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 MYH6P13533 1939 aa11.92□□□□□ -0.5
SYNPO-204ENST00000519664 ZNF536O15090 1300 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 FAM95CA0A1B0GW59 222 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 ZNF197O14709 1029 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 USP2O75604 605 aaPredicted RBP11.91□□□□□ -0.5
SYNPO-204ENST00000519664 FOXN2P32314 431 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 OXCT1P55809 520 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 OCA2Q04671 838 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 NFE2Q16621 373 aaPredicted RBP11.91□□□□□ -0.5
SYNPO-204ENST00000519664 NRF1Q16656 503 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 CLNKQ7Z7G1 428 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 WDR55Q9H6Y2 383 aaPredicted RBP11.91□□□□□ -0.5
SYNPO-204ENST00000519664 KCNH4Q9UQ05 1017 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 SH3BP1Q9Y3L3 701 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 SMIM28A0A1B0GU29 152 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 SH3BGRLO75368 114 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 CYBBP04839 570 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 MATKP42679 507 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 SLC10A6Q3KNW5 377 aa11.91□□□□□ -0.5
SYNPO-204ENST00000519664 RNASEH2BQ5TBB1 312 aaKnown RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms