RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 SH3BP4Q9P0V3 963 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 TRPC4Q9UBN4 977 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 SF3B1O75533 1304 aaKnown RBP eCLIP13.53□□□□□ -0.246e-6■■■■■ 114.9
TCOF1-214ENST00000515035 ATXN2Q99700 1313 aaKnown RBP13.53□□□□□ -0.24
TCOF1-214ENST00000515035 TRDMT1O14717 391 aaKnown RBP13.53□□□□□ -0.24
TCOF1-214ENST00000515035 NCAM2O15394 837 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 STX11O75558 287 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 ZMPSTE24O75844 475 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 DBTP11182 482 aaKnown RBP13.53□□□□□ -0.24
TCOF1-214ENST00000515035 IDH2P48735 452 aaKnown RBP13.53□□□□□ -0.24
TCOF1-214ENST00000515035 BCAT1P54687 386 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 PHKG1Q16816 387 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 SPANXN3Q5MJ09 141 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 CES3Q6UWW8 571 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 ILDR2Q71H61 639 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 S100ZQ8WXG8 99 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 MROH8Q9H579 483 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 ANKRD6Q9Y2G4 727 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 AP4B1Q9Y6B7 739 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 CCDC182A6NF36 153 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 DARSP14868 501 aaKnown RBP13.53□□□□□ -0.24
TCOF1-214ENST00000515035 ZNF284Q2VY69 593 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 FGD3Q5JSP0 725 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 NUDT18Q6ZVK8 323 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 TBCDQ9BTW9 1192 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 RPRD1BQ9NQG5 326 aaKnown RBP13.53□□□□□ -0.24
TCOF1-214ENST00000515035 KLHL28Q9NXS3 571 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 GALNT8Q9NY28 637 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 SCAF8Q9UPN6 1271 aaKnown RBP13.53□□□□□ -0.24
TCOF1-214ENST00000515035 COL5A2P05997 1499 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-214ENST00000515035 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-214ENST00000515035 A0A0U1RQJ8 604 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 PLSCR1O15162 318 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 CCNT2O60583 730 aaKnown RBP13.53□□□□□ -0.24
TCOF1-214ENST00000515035 PABPC1P11940 636 aaKnown RBP13.53□□□□□ -0.24
TCOF1-214ENST00000515035 COX4I1P13073 169 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 FGFR2P21802 821 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 TKTP29401 623 aaKnown RBP13.53□□□□□ -0.24
TCOF1-214ENST00000515035 BACE1P56817 501 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 PPATQ06203 517 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 ZNF177Q13360 481 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-214ENST00000515035 ZNF470Q6ECI4 717 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 ZNF544Q6NX49 715 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 DENND6AQ8IWF6 608 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 FBXO30Q8TB52 745 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 ZHX1-C8orf76Q96EF9 292 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 EPB41L4BQ9H329 900 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 REEP1Q9H902 201 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 MIEF1Q9NQG6 463 aa13.53□□□□□ -0.24
TCOF1-214ENST00000515035 HBS1LQ9Y450 684 aaKnown RBP13.53□□□□□ -0.24
TCOF1-214ENST00000515035 BCLAF3A2AJT9 711 aaKnown RBP13.52□□□□□ -0.24
TCOF1-214ENST00000515035 RXRGP48443 463 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 GALK1P51570 392 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 MYL6P60660 151 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 CAMK2GQ13555 558 aaPredicted RBP13.52□□□□□ -0.24
TCOF1-214ENST00000515035 SKIV2LQ15477 1246 aaKnown RBP13.52□□□□□ -0.24
TCOF1-214ENST00000515035 NOTUMQ6P988 496 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 PLEKHH3Q7Z736 793 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 HTR3CQ8WXA8 447 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 BORCS5Q969J3 196 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 VPS45Q9NRW7 570 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 GSTK1Q9Y2Q3 226 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 SNX8Q9Y5X2 465 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 FAM205AQ6ZU69 1335 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 AK9Q5TCS8 1911 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 CSDE1O75534 798 aaKnown RBP13.52□□□□□ -0.24
TCOF1-214ENST00000515035 MYL4P12829 197 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 GRIK3Q13003 919 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 MSLNQ13421 630 aaPredicted RBP13.52□□□□□ -0.24
TCOF1-214ENST00000515035 NTRK3Q16288 839 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 DENND5AQ6IQ26 1287 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 SLC35C1Q96A29 364 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 TBCBQ99426 244 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 NT5MQ9NPB1 228 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 PDGFCQ9NRA1 345 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 DMTF1Q9Y222 760 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 SH3GLB1Q9Y371 365 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 SH3BP1Q9Y3L3 701 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 TMEM131LA2VDJ0 1609 aa13.52□□□□□ -0.24
TCOF1-214ENST00000515035 BCL9O00512 1426 aa13.52□□□□□ -0.25
TCOF1-214ENST00000515035 LSM1O15116 133 aaKnown RBP13.52□□□□□ -0.25
TCOF1-214ENST00000515035 SNAP91O60641 907 aa13.52□□□□□ -0.25
TCOF1-214ENST00000515035 VPS4BO75351 444 aa13.52□□□□□ -0.25
TCOF1-214ENST00000515035 VAPBO95292 243 aa13.52□□□□□ -0.25
TCOF1-214ENST00000515035 WARSP23381 471 aaKnown RBP13.52□□□□□ -0.25
TCOF1-214ENST00000515035 RAP1GAPP47736 663 aa13.52□□□□□ -0.25
TCOF1-214ENST00000515035 USP46P62068 366 aa13.52□□□□□ -0.25
TCOF1-214ENST00000515035 ABATP80404 500 aa13.52□□□□□ -0.25
TCOF1-214ENST00000515035 SDE2Q6IQ49 451 aa13.52□□□□□ -0.25
TCOF1-214ENST00000515035 GLB1LQ6UWU2 654 aa13.52□□□□□ -0.25
TCOF1-214ENST00000515035 ZNF606Q8WXB4 792 aa13.52□□□□□ -0.25
TCOF1-214ENST00000515035 KIFC1Q9BW19 673 aa13.52□□□□□ -0.25
TCOF1-214ENST00000515035 POMKQ9H5K3 350 aa13.52□□□□□ -0.25
TCOF1-214ENST00000515035 RBM22Q9NW64 420 aaKnown RBP eCLIP13.52□□□□□ -0.25
TCOF1-214ENST00000515035 SEC22BO75396 215 aa13.52□□□□□ -0.25
TCOF1-214ENST00000515035 RECQL5O94762 991 aaPredicted RBP13.52□□□□□ -0.25
TCOF1-214ENST00000515035 PCNAP12004 261 aa13.52□□□□□ -0.25
TCOF1-214ENST00000515035 CASP5P51878 434 aa13.52□□□□□ -0.25
TCOF1-214ENST00000515035 PSME3P61289 254 aa13.52□□□□□ -0.25
TCOF1-214ENST00000515035 BST1Q10588 318 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms