RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 TFE3P19532 575 aaPredicted RBP10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 MAP4P27816 1152 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 PTPN9P43378 593 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 CDH18Q13634 790 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 PIGWQ7Z7B1 504 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 LRRC49Q8IUZ0 686 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 LMO3Q8TAP4 145 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 ZBTB10Q96DT7 871 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 QKIQ96PU8 341 aaKnown RBP eCLIP10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 CAMKK2Q96RR4 588 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 GMLQ99445 158 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 LGMNQ99538 433 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 LRMDAQ9H2I8 198 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 ZNF197O14709 1029 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 SNUPNO95149 360 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 BNIP1Q12981 228 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 BFSP2Q13515 415 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 RIPK1Q13546 671 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 FASTKD3Q14CZ7 662 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 C6orf10Q5SRN2 563 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 MAGEC3Q8TD91 643 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 DTNBP1Q96EV8 351 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 CNDP1Q96KN2 507 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 CSPG4P5Q96PW8 444 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 GPR88Q9GZN0 384 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 SDCBP2Q9H190 292 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 NXF3Q9H4D5 531 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 RHOCP08134 193 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 SERPINF2P08697 491 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 DARSP14868 501 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 NFKB1P19838 968 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 SCNN1GP51170 649 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 TTLL9Q3SXZ7 439 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 TTC23LQ6PF05 361 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 IFNEQ86WN2 208 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 CDHR5Q9HBB8 845 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 RNF19AQ9NV58 838 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 SYBUQ9NX95 663 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 LMCD1Q9NZU5 365 aa10.98□□□□□ -0.65
LIMCH1-205ENST00000503057 C2CD4BA6NLJ0 364 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 CRHR1P34998 444 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 OCA2Q04671 838 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 SYTL3Q4VX76 610 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 WLSQ5T9L3 541 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 PACS1Q6VY07 963 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 MOB2Q70IA6 237 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 SLC26A9Q7LBE3 791 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 TMC7Q7Z402 723 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 ANKS1BQ7Z6G8 1248 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 RNF168Q8IYW5 571 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 PLEKHO2Q8TD55 490 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 PPP2R3CQ969Q6 453 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 CNBD2Q96M20 576 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 ASB2Q96Q27 587 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 C17orf80Q9BSJ5 609 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 GPBP1L1Q9HC44 474 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 RABGEF1Q9UJ41 708 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 GIT1Q9Y2X7 761 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 IPPQ9Y573 584 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 MSCO60682 206 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 UPP2O95045 317 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 TGDSO95455 350 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 CYP3A5P20815 502 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 YWHAQP27348 245 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 MSLNQ13421 630 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 ADRM1Q16186 407 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 ZFP1Q6P2D0 407 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 ILDR2Q71H61 639 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 HERC6Q8IVU3 1022 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 DDI1Q8WTU0 396 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 KCTD15Q96SI1 283 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 RBBP8Q99708 897 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 POMKQ9H5K3 350 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 CASS4Q9NQ75 786 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 GEMIN8Q9NWZ8 242 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 CRLS1Q9UJA2 301 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 PLLPQ9Y342 182 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 LAMB1P07942 1786 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 KANSL1LA0AUZ9 987 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 DPYSL4O14531 572 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 SEC24DO94855 1032 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 ESRRBO95718 433 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 AKT1P31749 480 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 FKBP1BP68106 108 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 BIRC2Q13490 618 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 ARHGEF7Q14155 803 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 TMEM259Q4ZIN3 620 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 SLC39A12Q504Y0 691 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 TFAP2DQ7Z6R9 452 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 ANKRD23Q86SG2 305 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 CYGBQ8WWM9 190 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 USP6NLQ92738 828 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 ABTB1Q969K4 478 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 MYLPFQ96A32 169 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 RGS18Q9NS28 235 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 TRPM5Q9NZQ8 1165 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 STX18Q9P2W9 335 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 TTC36A6NLP5 189 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 C16orf96A6NNT2 1141 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 LGR5O75473 907 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms