RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 SYT13Q7L8C5 426 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 KCTD20Q7Z5Y7 419 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 EPHX4Q8IUS5 362 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 CCDC28AQ8IWP9 274 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 CNTROBQ8N137 903 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 SCML4Q8N228 414 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 SMRP1Q8NCR6 262 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 OR6B3Q8NGW1 331 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 USP6NLQ92738 828 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 SUCLG2Q96I99 432 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 SLC46A1Q96NT5 459 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 TRAPPC9Q96Q05 1148 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 LBHD1Q9BQE6 289 aaPredicted RBP3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 RTKNQ9BST9 563 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 MAGEB5Q9BZ81 275 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 TTYH3Q9C0H2 523 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 SLC25A18Q9H1K4 315 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 VPS16Q9H269 839 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 RMI1Q9H9A7 625 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 CHODLQ9H9P2 273 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 TRPV4Q9HBA0 871 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 XAB2Q9HCS7 855 aaKnown RBP3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 FSCN3Q9NQT6 498 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 ARHGEF3Q9NR81 526 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 PCDHB16Q9NRJ7 776 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 MTRRQ9UBK8 725 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 NAP1L2Q9ULW6 460 aaPredicted RBP3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 CTTNBP2Q8WZ74 1663 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 ABCA8O94911 1581 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 UHRF1BP1LA0JNW5 1464 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 GOLGA3Q08378 1498 aa3.45□□□□□ -1.86
DEPDC1-204ENST00000489862 VWA3AA6NCI4 1184 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 TARM1B6A8C7 271 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 DCLK1O15075 740 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 KCNQ3O43525 872 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 HTATSF1O43719 755 aaKnown RBP3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 DNAJB5O75953 348 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 F9P00740 461 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 TXNP10599 105 aaKnown RBP3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 ACADMP11310 421 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 NDUFB7P17568 137 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 CHMP24386 653 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 MST1P26927 711 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 TLX1P31314 330 aaPredicted RBP3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 PTGER1P34995 402 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 GARSP41250 739 aaKnown RBP3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 SLC12A2P55011 1212 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 PDCLQ13371 301 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 SRSF7Q16629 238 aaKnown RBP eCLIP3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 DUSP28Q4G0W2 176 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 LRRC24Q50LG9 513 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 BMP2KLQ5H9B9 411 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 UBAP2Q5T6F2 1119 aaKnown RBP3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 FAM160B1Q5W0V3 765 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 KRT74Q7RTS7 529 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 CATSPER4Q7RTX7 472 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 ZNF551Q7Z340 670 aaPredicted RBP3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 ANKS1BQ7Z6G8 1248 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 ADGRA1Q86SQ6 560 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 CCDC117Q8IWD4 279 aaPredicted RBP3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 CCDC170Q8IYT3 715 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 MPP5Q8N3R9 675 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 SLC15A4Q8N697 577 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 MSANTD4Q8NCY6 345 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 SEMA6DQ8NFY4 1073 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 BRIX1Q8TDN6 353 aaKnown RBP3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 CUL5Q93034 780 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 MCRS1Q96EZ8 462 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 CNDP2Q96KP4 475 aaKnown RBP3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 TIGD1Q96MW7 591 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 KRTAP4-3Q9BYR4 195 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 FTOQ9C0B1 505 aaKnown RBP eCLIP3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 PDE7BQ9NP56 450 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 EIF2B3Q9NR50 452 aaKnown RBP3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 SH3BP4Q9P0V3 963 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 ZNF212Q9UDV6 495 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 SNX8Q9Y5X2 465 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 ABCC2Q92887 1545 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 ATP10BO94823 1461 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 OBSCNQ5VST9 7968 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 KDM5BQ9UGL1 1544 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 FAM90A18PA6NE21 464 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 FAM90A16PA6NEW6 464 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 FAM90A20PA6NIJ5 464 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 LINC01548A6NM66 108 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 FAM90A9PA6NNJ1 464 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 FAM90A5PA8MXJ8 464 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 E7EVH7 732 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 PI4K2BG5E9Z4 385 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 RAB27BO00194 218 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 SH2B2O14492 632 aaPredicted RBP3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 PPP6R2O75170 966 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 TBX10O75333 385 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 CNPP09543 421 aaKnown RBP3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 FAM90A15PP0C7V4 464 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 FAM90A14PP0C7W9 464 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 NHLRC4P0CG21 123 aaPredicted RBP3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 NR2F1P10589 423 aa3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 PIM1P11309 404 aaPredicted RBP3.44□□□□□ -1.86
DEPDC1-204ENST00000489862 LAMP2P13473 410 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms