RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 PRICKLE1Q96MT3 831 aaPredicted RBP22.21■■□□□ 1.15
SMC4-221ENST00000489573 PRO3102Q9H379 93 aa22.21■■□□□ 1.15
SMC4-221ENST00000489573 CFAP97Q9P2B7 532 aa22.21■■□□□ 1.15
SMC4-221ENST00000489573 ZNF212Q9UDV6 495 aa22.21■■□□□ 1.15
SMC4-221ENST00000489573 ZMYM5Q9UJ78 669 aa22.21■■□□□ 1.15
SMC4-221ENST00000489573 A0A0A0MRY4 1105 aa22.21■■□□□ 1.15
SMC4-221ENST00000489573 RNF103O00237 685 aa22.21■■□□□ 1.15
SMC4-221ENST00000489573 MTSS1O43312 755 aa22.21■■□□□ 1.15
SMC4-221ENST00000489573 AVPR1AP37288 418 aa22.21■■□□□ 1.15
SMC4-221ENST00000489573 RNASEH2BQ5TBB1 312 aaKnown RBP22.21■■□□□ 1.15
SMC4-221ENST00000489573 LRRC49Q8IUZ0 686 aa22.21■■□□□ 1.15
SMC4-221ENST00000489573 CCDC13Q8IYE1 715 aa22.21■■□□□ 1.15
SMC4-221ENST00000489573 DEPDC1BQ8WUY9 529 aa22.21■■□□□ 1.15
SMC4-221ENST00000489573 SPATA13Q96N96 652 aa22.21■■□□□ 1.15
SMC4-221ENST00000489573 NSUN3Q9H649 340 aaKnown RBP22.21■■□□□ 1.15
SMC4-221ENST00000489573 NOL6Q9H6R4 1146 aaKnown RBP22.21■■□□□ 1.15
SMC4-221ENST00000489573 SEPT10Q9P0V9 454 aa22.21■■□□□ 1.15
SMC4-221ENST00000489573 ZNF510Q9Y2H8 683 aa22.21■■□□□ 1.15
SMC4-221ENST00000489573 ZFP37Q9Y6Q3 630 aaPredicted RBP22.21■■□□□ 1.15
SMC4-221ENST00000489573 LEFTY2O00292 366 aa22.2■■□□□ 1.14
SMC4-221ENST00000489573 CDH4P55283 916 aa22.2■■□□□ 1.14
SMC4-221ENST00000489573 BASP1P80723 227 aaKnown RBP22.2■■□□□ 1.14
SMC4-221ENST00000489573 MORF4L2Q15014 288 aa22.2■■□□□ 1.14
SMC4-221ENST00000489573 TTC39BQ5VTQ0 682 aaPredicted RBP22.2■■□□□ 1.14
SMC4-221ENST00000489573 TMC5Q6UXY8 1006 aa22.2■■□□□ 1.14
SMC4-221ENST00000489573 HTR3DQ70Z44 454 aa22.2■■□□□ 1.14
SMC4-221ENST00000489573 CFAP52Q8N1V2 620 aa22.2■■□□□ 1.14
SMC4-221ENST00000489573 TSGA13Q96PP4 275 aa22.2■■□□□ 1.14
SMC4-221ENST00000489573 IGFLR1Q9H665 355 aa22.2■■□□□ 1.14
SMC4-221ENST00000489573 SHOC2Q9UQ13 582 aa22.2■■□□□ 1.14
SMC4-221ENST00000489573 DOCK4Q8N1I0 1966 aa22.19■■□□□ 1.14
SMC4-221ENST00000489573 TRDMT1O14717 391 aaKnown RBP22.19■■□□□ 1.14
SMC4-221ENST00000489573 CCNCP24863 283 aa22.19■■□□□ 1.14
SMC4-221ENST00000489573 RPS24P62847 133 aaKnown RBP22.19■■□□□ 1.14
SMC4-221ENST00000489573 WASHC5Q12768 1159 aa22.19■■□□□ 1.14
SMC4-221ENST00000489573 ARHGEF18Q6ZSZ5 1173 aa22.19■■□□□ 1.14
SMC4-221ENST00000489573 CHST9Q7L1S5 443 aa22.19■■□□□ 1.14
SMC4-221ENST00000489573 HDXQ7Z353 690 aa22.19■■□□□ 1.14
SMC4-221ENST00000489573 FAM217AQ8IXS0 508 aa22.19■■□□□ 1.14
SMC4-221ENST00000489573 PPIL6Q8IXY8 311 aa22.19■■□□□ 1.14
SMC4-221ENST00000489573 CPT1BQ92523 772 aa22.19■■□□□ 1.14
SMC4-221ENST00000489573 SMG9Q9H0W8 520 aaKnown RBP22.19■■□□□ 1.14
SMC4-221ENST00000489573 MRPS23Q9Y3D9 190 aaKnown RBP22.19■■□□□ 1.14
SMC4-221ENST00000489573 FARP1Q9Y4F1 1045 aaPredicted RBP22.19■■□□□ 1.14
SMC4-221ENST00000489573 LAMA2P24043 3122 aaKnown RBP22.18■■□□□ 1.14
SMC4-221ENST00000489573 ARHGAP42A6NI28 874 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 RASA4BC9J798 803 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 KCNK1O00180 336 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 SCAMP3O14828 347 aaKnown RBP22.18■■□□□ 1.14
SMC4-221ENST00000489573 RASA4O43374 803 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 OPHN1O60890 802 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 RAMP2O60895 175 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 CEBPBP17676 345 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 PTPN3P26045 913 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 OR1E1P30953 314 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 PAPOLAP51003 745 aaKnown RBP22.18■■□□□ 1.14
SMC4-221ENST00000489573 ANKRD20A2Q5SQ80 823 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 ANKRD20A1Q5TYW2 823 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 ANKRD20A3Q5VUR7 823 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 ARHGAP36Q6ZRI8 547 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 HOOK3Q86VS8 718 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 MREGQ8N565 214 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 TAB3Q8N5C8 712 aaPredicted RBP22.18■■□□□ 1.14
SMC4-221ENST00000489573 TTC16Q8NEE8 873 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 SH3RF2Q8TEC5 729 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 FUT8Q9BYC5 575 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 RAB6BQ9NRW1 208 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 NOTCH4Q99466 2003 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 LAMA3Q16787 3333 aa22.18■■□□□ 1.14
SMC4-221ENST00000489573 SMAPO00193 183 aa22.17■■□□□ 1.14
SMC4-221ENST00000489573 TSPAN3O60637 253 aa22.17■■□□□ 1.14
SMC4-221ENST00000489573 CLDN11O75508 207 aa22.17■■□□□ 1.14
SMC4-221ENST00000489573 HSPA9P38646 679 aaKnown RBP22.17■■□□□ 1.14
SMC4-221ENST00000489573 SGSHP51688 502 aa22.17■■□□□ 1.14
SMC4-221ENST00000489573 YBEYP58557 167 aaPredicted RBP22.17■■□□□ 1.14
SMC4-221ENST00000489573 HYAL1Q12794 435 aa22.17■■□□□ 1.14
SMC4-221ENST00000489573 CASP8Q14790 479 aa22.17■■□□□ 1.14
SMC4-221ENST00000489573 PARP15Q460N3 678 aa22.17■■□□□ 1.14
SMC4-221ENST00000489573 TCEAL5Q5H9L2 206 aa22.17■■□□□ 1.14
SMC4-221ENST00000489573 FAM182AQ5T1J6 154 aa22.17■■□□□ 1.14
SMC4-221ENST00000489573 TIGD7Q6NT04 549 aaPredicted RBP22.17■■□□□ 1.14
SMC4-221ENST00000489573 TMC3Q7Z5M5 1100 aa22.17■■□□□ 1.14
SMC4-221ENST00000489573 HJURPQ8NCD3 748 aaPredicted RBP22.17■■□□□ 1.14
SMC4-221ENST00000489573 PRCCQ92733 491 aaPredicted RBP22.17■■□□□ 1.14
SMC4-221ENST00000489573 HMCESQ96FZ2 354 aa22.17■■□□□ 1.14
SMC4-221ENST00000489573 VAT1Q99536 393 aa22.17■■□□□ 1.14
SMC4-221ENST00000489573 FOXP3Q9BZS1 431 aa22.17■■□□□ 1.14
SMC4-221ENST00000489573 ZNF576Q9H609 170 aa22.17■■□□□ 1.14
SMC4-221ENST00000489573 CHD7Q9P2D1 2997 aa22.17■■□□□ 1.14
SMC4-221ENST00000489573 CHD9Q3L8U1 2897 aa22.17■■□□□ 1.14
SMC4-221ENST00000489573 HELZP42694 1942 aaKnown RBP22.17■■□□□ 1.14
SMC4-221ENST00000489573 A0A1B0GVM2 712 aa22.16■■□□□ 1.14
SMC4-221ENST00000489573 TCAF2A6NFQ2 919 aa22.16■■□□□ 1.14
SMC4-221ENST00000489573 GFRA2O00451 464 aa22.16■■□□□ 1.14
SMC4-221ENST00000489573 ATP8B1O43520 1251 aa22.16■■□□□ 1.14
SMC4-221ENST00000489573 MAFKO60675 156 aa22.16■■□□□ 1.14
SMC4-221ENST00000489573 DHX9Q08211 1270 aaKnown RBP22.16■■□□□ 1.14
SMC4-221ENST00000489573 RARS2Q5T160 578 aaKnown RBP22.16■■□□□ 1.14
SMC4-221ENST00000489573 TMEM184AQ6ZMB5 413 aa22.16■■□□□ 1.14
SMC4-221ENST00000489573 ZNF567Q8N184 647 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms