RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 FLOT2Q14254 428 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 PIGGQ5H8A4 983 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 FSTL4Q6MZW2 842 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 B3GNT6Q6ZMB0 384 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 BNC2Q6ZN30 1099 aaPredicted RBP12.47□□□□□ -0.41
COL3A1-206ENST00000487010 STRA8Q7Z7C7 330 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 TICAM1Q8IUC6 712 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 AHI1Q8N157 1196 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 METTL25Q8N6Q8 603 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 ADCY4Q8NFM4 1077 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 RP9Q8TA86 221 aaKnown RBP12.47□□□□□ -0.41
COL3A1-206ENST00000487010 AGR3Q8TD06 166 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 ATXN7L3BQ96GX2 97 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 ZFRQ96KR1 1074 aaKnown RBP12.47□□□□□ -0.41
COL3A1-206ENST00000487010 SPATA33Q96N06 139 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 CDRT15Q96T59 188 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 GATA5Q9BWX5 397 aaPredicted RBP12.47□□□□□ -0.41
COL3A1-206ENST00000487010 ILKAPQ9H0C8 392 aaPredicted RBP12.47□□□□□ -0.41
COL3A1-206ENST00000487010 SEPT10Q9P0V9 454 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 RIMS3Q9UJD0 308 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 FZD10Q9ULW2 581 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 PCDHGB4Q9UN71 923 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 PCDHGB5Q9Y5G0 923 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 AP4B1Q9Y6B7 739 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 A0A087WZ62 844 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 A0A096LPK6 155 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 MATN2O00339 956 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 C22orf31O95567 290 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 ARF4P18085 180 aaPredicted RBP12.47□□□□□ -0.41
COL3A1-206ENST00000487010 XRCC1P18887 633 aaPredicted RBP12.47□□□□□ -0.41
COL3A1-206ENST00000487010 SCNN1AP37088 669 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 SLC26A2P50443 739 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 THOP1P52888 689 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 IRF9Q00978 393 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 IFRD2Q12894 506 aaPredicted RBP12.47□□□□□ -0.41
COL3A1-206ENST00000487010 CYLC2Q14093 348 aaPredicted RBP12.47□□□□□ -0.41
COL3A1-206ENST00000487010 NADK2Q4G0N4 442 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 PPM1LQ5SGD2 360 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 KLHDC10Q6PID8 442 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 ZNF567Q8N184 647 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 CPSF7Q8N684 471 aaKnown RBP12.47□□□□□ -0.41
COL3A1-206ENST00000487010 NETO2Q8NC67 525 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 KIF12Q96FN5 646 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 PGLYRP2Q96PD5 576 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 FDXACB1Q9BRP7 624 aaPredicted RBP12.47□□□□□ -0.41
COL3A1-206ENST00000487010 SMARCAD1Q9H4L7 1026 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 WDR55Q9H6Y2 383 aaPredicted RBP12.47□□□□□ -0.41
COL3A1-206ENST00000487010 ZNF696Q9H7X3 374 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 LRRC40Q9H9A6 602 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 PRDM16Q9HAZ2 1276 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 NMRAL1Q9HBL8 299 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 RCOR3Q9P2K3 495 aaPredicted RBP12.47□□□□□ -0.41
COL3A1-206ENST00000487010 BCAP29Q9UHQ4 241 aa12.47□□□□□ -0.41
COL3A1-206ENST00000487010 TNS1Q9HBL0 1735 aaKnown RBP12.47□□□□□ -0.41
COL3A1-206ENST00000487010 CITO14578 2027 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 SOCS7O14512 581 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 SLC22A2O15244 555 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 STRNO43815 780 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 TNFAIP8O95379 198 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 LTFP02788 710 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 SRGAP2BP0DMP2 458 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 LCP1P13796 627 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 MPSTP25325 297 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 RANBP1P43487 201 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 MYBPC1Q00872 1141 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 LSM12Q3MHD2 195 aaKnown RBP12.46□□□□□ -0.41
COL3A1-206ENST00000487010 TMEM259Q4ZIN3 620 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 ARHGAP17Q68EM7 881 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 STRADAQ7RTN6 431 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 LCA5Q86VQ0 697 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 NT5DC4Q86YG4 428 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 IFNLR1Q8IU57 520 aaPredicted RBP12.46□□□□□ -0.41
COL3A1-206ENST00000487010 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.46□□□□□ -0.41
COL3A1-206ENST00000487010 OR52K1Q8NGK4 314 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 SLC7A14Q8TBB6 771 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 URGCPQ8TCY9 931 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 KBTBD7Q8WVZ9 684 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 ZNF669Q96BR6 464 aaPredicted RBP12.46□□□□□ -0.41
COL3A1-206ENST00000487010 LENG1Q96BZ8 264 aaPredicted RBP12.46□□□□□ -0.41
COL3A1-206ENST00000487010 KLRG1Q96E93 195 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 CNBD2Q96M20 576 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 AGAP3Q96P47 875 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 PPP1R16BQ96T49 567 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 AGAP2Q99490 1192 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 LPIN3Q9BQK8 851 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 RBM38Q9H0Z9 239 aaKnown RBP12.46□□□□□ -0.41
COL3A1-206ENST00000487010 CAB39LQ9H9S4 337 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 OXSMQ9NWU1 459 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 IGSF9Q9P2J2 1179 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 RAP2CQ9Y3L5 183 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 SNX9Q9Y5X1 595 aa12.46□□□□□ -0.41
COL3A1-206ENST00000487010 WDR90Q96KV7 1748 aa12.46□□□□□ -0.42
COL3A1-206ENST00000487010 ZSWIM8A7E2V4 1837 aa12.46□□□□□ -0.42
COL3A1-206ENST00000487010 SCN1AP35498 2009 aa12.46□□□□□ -0.42
COL3A1-206ENST00000487010 ZNF638Q14966 1978 aaKnown RBP12.46□□□□□ -0.42
COL3A1-206ENST00000487010 BTBD19C9JJ37 291 aa12.46□□□□□ -0.42
COL3A1-206ENST00000487010 NEMP1O14524 444 aa12.46□□□□□ -0.42
COL3A1-206ENST00000487010 HDAC3O15379 428 aa12.46□□□□□ -0.42
COL3A1-206ENST00000487010 TMCC1O94876 653 aa12.46□□□□□ -0.42
COL3A1-206ENST00000487010 CAPNS1P04632 268 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms