RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 TMEM200AQ86VY9 491 aa4.34□□□□□ -1.71
VPS41-213ENST00000485955 TMEM217Q8N7C4 229 aa4.34□□□□□ -1.71
VPS41-213ENST00000485955 OIT3Q8WWZ8 545 aa4.34□□□□□ -1.71
VPS41-213ENST00000485955 FRMD8Q9BZ67 464 aaPredicted RBP4.34□□□□□ -1.71
VPS41-213ENST00000485955 LIN7CQ9NUP9 197 aaKnown RBP4.34□□□□□ -1.71
VPS41-213ENST00000485955 RCE1Q9Y256 329 aa4.34□□□□□ -1.71
VPS41-213ENST00000485955 ABCC9O60706 1549 aa4.34□□□□□ -1.71
VPS41-213ENST00000485955 TCRBV7S3A2A0A539 114 aa4.33□□□□□ -1.72
VPS41-213ENST00000485955 MBD3L5A6NJ08 208 aaPredicted RBP4.33□□□□□ -1.72
VPS41-213ENST00000485955 PGGT1BP53609 377 aa4.33□□□□□ -1.72
VPS41-213ENST00000485955 RCAN1P53805 252 aa4.33□□□□□ -1.72
VPS41-213ENST00000485955 RHAGQ02094 409 aa4.33□□□□□ -1.72
VPS41-213ENST00000485955 PUM3Q15397 648 aaKnown RBP4.33□□□□□ -1.72
VPS41-213ENST00000485955 ZACNQ401N2 412 aa4.33□□□□□ -1.72
VPS41-213ENST00000485955 KIAA1161Q6NSJ0 714 aa4.33□□□□□ -1.72
VPS41-213ENST00000485955 ERAP2Q6P179 960 aa4.33□□□□□ -1.72
VPS41-213ENST00000485955 PGBD2Q6P3X8 592 aa4.33□□□□□ -1.72
VPS41-213ENST00000485955 ATG16L2Q8NAA4 619 aa4.33□□□□□ -1.72
VPS41-213ENST00000485955 LPAR1Q92633 364 aa4.33□□□□□ -1.72
VPS41-213ENST00000485955 ZNF419Q96HQ0 510 aaPredicted RBP4.33□□□□□ -1.72
VPS41-213ENST00000485955 URB1-AS1Q96HZ7 61 aa4.33□□□□□ -1.72
VPS41-213ENST00000485955 NPAS1Q99742 590 aa4.33□□□□□ -1.72
VPS41-213ENST00000485955 ZPBPQ9BS86 351 aa4.33□□□□□ -1.72
VPS41-213ENST00000485955 RTKNQ9BST9 563 aa4.33□□□□□ -1.72
VPS41-213ENST00000485955 TMEM120AQ9BXJ8 343 aa4.33□□□□□ -1.72
VPS41-213ENST00000485955 HDHD5Q9BXW7 423 aa4.33□□□□□ -1.72
VPS41-213ENST00000485955 ARHGAP39Q9C0H5 1083 aa4.33□□□□□ -1.72
VPS41-213ENST00000485955 RBM38Q9H0Z9 239 aaKnown RBP4.33□□□□□ -1.72
VPS41-213ENST00000485955 ISCUQ9H1K1 167 aa4.33□□□□□ -1.72
VPS41-213ENST00000485955 PKP3Q9Y446 797 aa4.33□□□□□ -1.72
VPS41-213ENST00000485955 INSL5Q9Y5Q6 135 aa4.33□□□□□ -1.72
VPS41-213ENST00000485955 ABHD14A-ACY1A0A1B0GW23 586 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 BECN2A8MW95 431 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 SPTLC2O15270 562 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 ACTL6BO94805 426 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 PLA2G2AP14555 144 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 PRPH2P23942 346 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 SERPINF1P36955 418 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 HTR3AP46098 478 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 RFX5P48382 616 aaPredicted RBP4.32□□□□□ -1.72
VPS41-213ENST00000485955 POLE2P56282 527 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 GALNTL6Q49A17 601 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 Q5PR19 223 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 ATPAF1Q5TC12 328 aaPredicted RBP4.32□□□□□ -1.72
VPS41-213ENST00000485955 NFRKBQ6P4R8 1299 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 SLC30A9Q6PML9 568 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 KLBQ86Z14 1044 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 SLC44A2Q8IWA5 706 aaPredicted RBP4.32□□□□□ -1.72
VPS41-213ENST00000485955 CCDC146Q8IYE0 955 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 SLC39A13Q96H72 371 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 ZNF479Q96JC4 524 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 CRB3Q9BUF7 120 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.32□□□□□ -1.72
VPS41-213ENST00000485955 BRD8Q9H0E9 1235 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 ZNF700Q9H0M5 742 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 MYLK2Q9H1R3 596 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 PABPC3Q9H361 631 aaKnown RBP4.32□□□□□ -1.72
VPS41-213ENST00000485955 ABHD16BQ9H3Z7 469 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 TASP1Q9H6P5 420 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 PRDM8Q9NQV8 689 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 ARL15Q9NXU5 204 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 TBC1D14Q9P2M4 693 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 LRCH1Q9Y2L9 728 aa4.32□□□□□ -1.72
VPS41-213ENST00000485955 TRBV5-7A0A0A0MS05 114 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 RPS10-NUDT3A0A1W2PQS6 291 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 SLC28A2O43868 658 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 NGFRP08138 427 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 ITGA2BP08514 1039 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 KLRC2P26717 231 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 CHRNA5P30532 468 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 CDK7P50613 346 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 TNFAIP2Q03169 654 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 TRAF1Q13077 416 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 TTC22Q5TAA0 569 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 MTFR2Q6P444 385 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 PARM1Q6UWI2 310 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 SLC16A12Q6ZSM3 486 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 ANKS1BQ7Z6G8 1248 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 KDM1BQ8NB78 822 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 C7orf57Q8NEG2 295 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 ENGASEQ8NFI3 743 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 CMASQ8NFW8 434 aaPredicted RBP4.31□□□□□ -1.72
VPS41-213ENST00000485955 ELAC1Q9H777 363 aaKnown RBP4.31□□□□□ -1.72
VPS41-213ENST00000485955 PDE11AQ9HCR9 933 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 PNRC2Q9NPJ4 139 aaKnown RBP4.31□□□□□ -1.72
VPS41-213ENST00000485955 HERC5Q9UII4 1024 aaKnown RBP4.31□□□□□ -1.72
VPS41-213ENST00000485955 PCDHA7Q9UN72 937 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 NOTCH4Q99466 2003 aa4.31□□□□□ -1.72
VPS41-213ENST00000485955 EFCAB8A8MWE9 144 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 GRM8O00222 908 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 SYT5O00445 386 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 PLIN1O60240 522 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 SKAP2O75563 359 aaPredicted RBP4.3□□□□□ -1.72
VPS41-213ENST00000485955 KLKB1P03952 638 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 LCKP06239 509 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 LYL1P12980 280 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 HOXB9P17482 250 aaPredicted RBP4.3□□□□□ -1.72
VPS41-213ENST00000485955 TNFRSF8P28908 595 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 CDC25AP30304 524 aa4.3□□□□□ -1.72
VPS41-213ENST00000485955 SLC16A2P36021 539 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms