RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 YME1L1Q96TA2 773 aa7.89□□□□□ -1.15
USP4-211ENST00000485450 TUBB6Q9BUF5 446 aa7.89□□□□□ -1.15
USP4-211ENST00000485450 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.89□□□□□ -1.15
USP4-211ENST00000485450 GPR88Q9GZN0 384 aa7.89□□□□□ -1.15
USP4-211ENST00000485450 CYP3A43Q9HB55 503 aa7.89□□□□□ -1.15
USP4-211ENST00000485450 TRPV4Q9HBA0 871 aa7.89□□□□□ -1.15
USP4-211ENST00000485450 PNPLA8Q9NP80 782 aa7.89□□□□□ -1.15
USP4-211ENST00000485450 HCSTQ9UBK5 93 aa7.89□□□□□ -1.15
USP4-211ENST00000485450 ADAMTS1Q9UHI8 967 aa7.89□□□□□ -1.15
USP4-211ENST00000485450 HEMK1Q9Y5R4 338 aaPredicted RBP7.89□□□□□ -1.15
USP4-211ENST00000485450 GPC6Q9Y625 555 aaPredicted RBP7.89□□□□□ -1.15
USP4-211ENST00000485450 FUOMA2VDF0 154 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 OR6C75A6NL08 312 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 CBFA2T3O75081 653 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 SMIM18P0DKX4 95 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 NAGAP17050 411 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 ACO1P21399 889 aaKnown RBP7.88□□□□□ -1.15
USP4-211ENST00000485450 AKAP5P24588 427 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 ERVFC1P60507 584 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 RPS3AP61247 264 aaKnown RBP7.88□□□□□ -1.15
USP4-211ENST00000485450 CYTH1Q15438 398 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 PTPROQ16827 1216 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 C1orf228Q6PIY5 440 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 TMCO2Q7Z6W1 182 aaPredicted RBP7.88□□□□□ -1.15
USP4-211ENST00000485450 NT5DC3Q86UY8 548 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 TCEAL8Q8IYN2 117 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 SYCE1Q8N0S2 351 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 TRMT2BQ96GJ1 504 aaKnown RBP7.88□□□□□ -1.15
USP4-211ENST00000485450 C1orf74Q96LT6 269 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 CLSTN3Q9BQT9 956 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 PAAF1Q9BRP4 392 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 SYT11Q9BT88 431 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 NDFIP2Q9NV92 336 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 NKIRAS1Q9NYS0 192 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 ZFP69BQ9UJL9 534 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 LRFN2Q9ULH4 789 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 HES2Q9Y543 173 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 RANBP2P49792 3224 aaKnown RBP7.88□□□□□ -1.15
USP4-211ENST00000485450 ANPEPP15144 967 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 BTF3P20290 206 aaKnown RBP7.88□□□□□ -1.15
USP4-211ENST00000485450 PRKACBP22694 351 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 PTGIRP43119 386 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 NDUFV1P49821 464 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 GCNT1Q02742 428 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 SYCP2LQ5T4T6 812 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 KLHDC10Q6PID8 442 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 CLNKQ7Z7G1 428 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 UNC93AQ86WB7 457 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 VPS52Q8N1B4 723 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 SMRP1Q8NCR6 262 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 PTCD3Q96EY7 689 aaKnown RBP7.88□□□□□ -1.15
USP4-211ENST00000485450 MYRFLQ96LU7 910 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 ACBD6Q9BR61 282 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 TTLL2Q9BWV7 592 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 GPR62Q9BZJ7 368 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 SIAEQ9HAT2 523 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 DPP3Q9NY33 737 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 ARMCX3Q9UH62 379 aaPredicted RBP7.88□□□□□ -1.15
USP4-211ENST00000485450 DOLKQ9UPQ8 538 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 PCDHA3Q9Y5H8 950 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 ACTL7BQ9Y614 415 aa7.88□□□□□ -1.15
USP4-211ENST00000485450 A0A0A6YYK5 440 aaPredicted RBP7.87□□□□□ -1.15
USP4-211ENST00000485450 SH3PXD2BA1X283 911 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 MATN2O00339 956 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 STK25O00506 426 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 C2CD2LO14523 706 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 TCEA3O75764 348 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 HNRNPA1P09651 372 aaKnown RBP eCLIP7.87□□□□□ -1.15
USP4-211ENST00000485450 TCEA1P23193 301 aaKnown RBP7.87□□□□□ -1.15
USP4-211ENST00000485450 RPL21P46778 160 aaKnown RBP7.87□□□□□ -1.15
USP4-211ENST00000485450 CASP4P49662 377 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 JAM2P57087 298 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 RAB15P59190 212 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 RPL26P61254 145 aaKnown RBP7.87□□□□□ -1.15
USP4-211ENST00000485450 PPP3CAQ08209 521 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 CLUL1Q15846 466 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 SV2CQ496J9 727 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 BOLA3Q53S33 107 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 PRSS36Q5K4E3 855 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 SCARA3Q6AZY7 606 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 RBM44Q6ZP01 1051 aaKnown RBP7.87□□□□□ -1.15
USP4-211ENST00000485450 METTL25Q8N6Q8 603 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 C12orf50Q8NA57 414 aaPredicted RBP7.87□□□□□ -1.15
USP4-211ENST00000485450 OR5B17Q8NGF7 314 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 ACTRT2Q8TDY3 377 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 C18orf25Q96B23 403 aaPredicted RBP7.87□□□□□ -1.15
USP4-211ENST00000485450 ITPKCQ96DU7 683 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 ZNF560Q96MR9 790 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 EBF3Q9H4W6 596 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 CYLDQ9NQC7 956 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 NENFQ9UMX5 172 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 LOC730098B7Z3J9 87 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 PABPC1P11940 636 aaKnown RBP7.87□□□□□ -1.15
USP4-211ENST00000485450 S100A5P33763 92 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 RPL5P46777 297 aaKnown RBP7.87□□□□□ -1.15
USP4-211ENST00000485450 VAMP7P51809 220 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 RAP1GDS1P52306 607 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 MLLT6P55198 1093 aaPredicted RBP7.87□□□□□ -1.15
USP4-211ENST00000485450 NAA20P61599 178 aa7.87□□□□□ -1.15
USP4-211ENST00000485450 GBE1Q04446 702 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms