RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 SPAG5Q96R06 1193 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 CDC6Q99741 560 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 KDM4CQ9H3R0 1056 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 TM9SF3Q9HD45 589 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 PCOLCE2Q9UKZ9 415 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 APOBEC2Q9Y235 224 aaKnown RBP12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 SPEGQ15772 3267 aa12.51□□□□□ -0.41
SQSTM1-207ENST00000481335 CHD6Q8TD26 2715 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 AKAP13Q12802 2813 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 SPAARA0A1B0GVQ0 90 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 A0A1W2PPC4 97 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 C10orf142B7Z368 130 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 SLC7A4O43246 635 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 SH3BP5O60239 455 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 PCDHGA12O60330 932 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 ERBB2P04626 1255 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 CYP11B1P15538 503 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 NUDT1P36639 197 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 CCT8P50990 548 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 CCR5P51681 352 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 CDH4P55283 916 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 PITX1P78337 314 aaPredicted RBP12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 APBA1Q02410 837 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 AUHQ13825 339 aaKnown RBP12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 TAF5Q15542 800 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 HLA-BQ31612 363 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 INAVAQ3KP66 663 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 CXorf57Q6NSI4 855 aaKnown RBP12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 FBXL22Q6P050 247 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 MMS22LQ6ZRQ5 1243 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 SND1Q7KZF4 910 aaKnown RBP eCLIP12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 RAB44Q7Z6P3 723 aaPredicted RBP12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 ZNF677Q86XU0 584 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 BAHD1Q8TBE0 780 aaPredicted RBP12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 PTPRN2Q92932 1015 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 NT5C3BQ969T7 300 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 OMDQ99983 421 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 PLCB1Q9NQ66 1216 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 ARHGEF38Q9NXL2 777 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 SLC25A13Q9UJS0 675 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 ANKRD6Q9Y2G4 727 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 TBC1D30Q9Y2I9 924 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 PTPRBP23467 1997 aa12.5□□□□□ -0.41
SQSTM1-207ENST00000481335 ZFHX4Q86UP3 3567 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 A0A1B0GVT2 93 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 A0A1W2PP55 124 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 TTC34A8MYJ7 566 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 C1QTNF9BB2RNN3 333 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 M0QYT0 321 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 VILLO15195 856 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 MID1O15344 667 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 YKT6O15498 198 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 HYAL3O43820 417 aaPredicted RBP12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 ATP9BO43861 1147 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 FSBPO95073 299 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 IGHV4-34P06331 123 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 FTH1P19P0C7X4 201 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 C1QTNF9P0C862 333 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 UCHL3P15374 230 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 PDGFRAP16234 1089 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 GOT1P17174 413 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 MZF1P28698 734 aaPredicted RBP12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 SLC8A1P32418 973 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 CSNK1EP49674 416 aaKnown RBP12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 CXCR3P49682 368 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 GALCP54803 685 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 BNC1Q01954 994 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 ZNF177Q13360 481 aaPredicted RBP12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 RAPGEF1Q13905 1077 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 KCNJ12Q14500 433 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 DRAP1Q14919 205 aaPredicted RBP12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 TCP11X2Q5H9J9 407 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 KLHDC7AQ5VTJ3 777 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 FAM46CQ5VWP2 391 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 DPY19L2P1Q6NXN4 242 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 ADAT2Q7Z6V5 191 aaKnown RBP12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 SETD3Q86TU7 594 aaPredicted RBP12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 MMAAQ8IVH4 418 aaKnown RBP12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 APCDD1Q8J025 514 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 GANCQ8TET4 914 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 OR8D1Q8WZ84 308 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 C18orf8Q96DM3 657 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 FAM129BQ96TA1 746 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 NPY6RQ99463 290 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 ORAI3Q9BRQ5 295 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 NAA15Q9BXJ9 866 aaKnown RBP12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 ACE2Q9BYF1 805 aaPredicted RBP12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 STK33Q9BYT3 514 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 PDCL3Q9H2J4 239 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 WDCPQ9H6R7 721 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.49□□□□□ -0.415e-15■■□□□ 14.4
SQSTM1-207ENST00000481335 SLCO3A1Q9UIG8 710 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 AJAP1Q9UKB5 411 aaPredicted RBP12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 FNDC3AQ9Y2H6 1198 aaKnown RBP12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 HS3ST4Q9Y661 456 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 CHD5Q8TDI0 1954 aa12.49□□□□□ -0.41
SQSTM1-207ENST00000481335 FREM2Q5SZK8 3169 aa12.48□□□□□ -0.41
SQSTM1-207ENST00000481335 SYNJ2BP-COX16A0A087WUM0 186 aa12.48□□□□□ -0.41
SQSTM1-207ENST00000481335 CXorf51AA0A1B0GTR3 108 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms