RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	PLEKHG6	Q3KR16	790 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	TDRD12	Q587J7	1177 aa	Known RBP	11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	SPDYC	Q5MJ68	293 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	STPG1	Q5TH74	334 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	SFMBT2	Q5VUG0	894 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	DAB2IP	Q5VWQ8	1189 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	DCUN1D2	Q6PH85	259 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	TFAP2D	Q7Z6R9	452 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	LUZP1	Q86V48	1076 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	ZNF354C	Q86Y25	554 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	APCDD1	Q8J025	514 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	CEP76	Q8TAP6	659 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	RXFP2	Q8WXD0	754 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	OMD	Q99983	421 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	TMEM9B	Q9NQ34	198 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	RTN4	Q9NQC3	1192 aa	Known RBP	11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	SUSD2	Q9UGT4	822 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	ANGPTL2	Q9UKU9	493 aa		11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.87	□□□□□ -0.51
CPNE1-222	ENST00000473373	LRRC10B	A6NIK2	292 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	LRRC53	A6NM62	1247 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	SIN3B	O75182	1162 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	TPM3	P06753	285 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	CHRNB2	P17787	502 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	GPD1	P21695	349 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	MMP8	P22894	467 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	MZF1	P28698	734 aa	Predicted RBP	11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	OR1E1	P30953	314 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	CTSO	P43234	321 aa	Predicted RBP	11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	PSMD8	P48556	350 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	CXCR3	P49682	368 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	STK19	P49842	368 aa	Predicted RBP	11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	COPA	P53621	1224 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	UBASH3A	P57075	661 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	ENPP2	Q13822	863 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	PTPRN	Q16849	979 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	C15orf59	Q2T9L4	293 aa	Predicted RBP	11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	PLA2G2C	Q5R387	149 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	ACBD5	Q5T8D3	534 aa	Predicted RBP	11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	RWDD4	Q6NW29	188 aa	Known RBP	11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	PPP1R2P3	Q6NXS1	205 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	SCYL2	Q6P3W7	929 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	HDDC3	Q8N4P3	179 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	IGSF8	Q969P0	613 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	TTC17	Q96AE7	1141 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	PRMT1	Q99873	361 aa	Known RBP	11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	BTBD1	Q9H0C5	482 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	TMEM245	Q9H330	911 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	MTG2	Q9H4K7	406 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	CBX8	Q9HC52	389 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	PRSS16	Q9NQE7	514 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	ITM2C	Q9NQX7	267 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	RXFP3	Q9NSD7	469 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	ARHGEF38	Q9NXL2	777 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	SNX10	Q9Y5X0	201 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	TMEM131	Q92545	1883 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	CHD8	Q9HCK8	2581 aa		11.86	□□□□□ -0.51
CPNE1-222	ENST00000473373	PLXNA2	O75051	1894 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	LNP1	A1A4G5	178 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	C4orf47	A7E2U8	309 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	TTC34	A8MYJ7	566 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373		E9PAM4	449 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	GJB6	O95452	261 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	IL1B	P01584	269 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	SYP	P08247	313 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	MAOB	P27338	520 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	RPS14	P62263	151 aa	Known RBP	11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	IRX4	P78413	519 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	FANCC	Q00597	558 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	KLHL30	Q0D2K2	578 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	HNRNPA1L2	Q32P51	320 aa	Known RBP	11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	C6orf118	Q5T5N4	469 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	DCAF12L1	Q5VU92	463 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	DSG4	Q86SJ6	1040 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	C14orf80	Q86SX3	495 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	VPS36	Q86VN1	386 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	MMAA	Q8IVH4	418 aa	Known RBP	11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	FAM172A	Q8WUF8	416 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	PGAP3	Q96FM1	320 aa	Predicted RBP	11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	CCDC114	Q96M63	670 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	MCEE	Q96PE7	176 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	PCDHB18P	Q96TA0	734 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	SPON2	Q9BUD6	331 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	C2orf49	Q9BVC5	232 aa	Predicted RBP	11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	HSD3B7	Q9H2F3	369 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	TMPRSS4	Q9NRS4	437 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	FBXL12	Q9NXK8	326 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	WSB2	Q9NYS7	404 aa	Predicted RBP	11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	MPP6	Q9NZW5	540 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	USP36	Q9P275	1121 aa	Known RBP	11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	TMEM59L	Q9UK28	342 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	INTS6	Q9UL03	887 aa	Known RBP	11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	MYO6	Q9UM54	1294 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	SLC6A14	Q9UN76	642 aa		11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373	MAP1B	P46821	2468 aa	Known RBP	11.85	□□□□□ -0.51
CPNE1-222	ENST00000473373		A0A1W2PQC6	194 aa		11.84	□□□□□ -0.51
CPNE1-222	ENST00000473373	TARSL2	A2RTX5	802 aa	Known RBP	11.84	□□□□□ -0.51
CPNE1-222	ENST00000473373	RNASEH2A	O75792	299 aa	Known RBP	11.84	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms