RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 RSPH9Q9H1X1 276 aaPredicted RBP16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 GANQ9H2C0 597 aa16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 HS3ST4Q9Y661 456 aa16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 GOLGA6L22H0YM25 854 aa16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 GOLGA8SH3BPF8 625 aa16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 BCAT2O15382 392 aaPredicted RBP16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 RNASEH1O60930 286 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 PAGE1O75459 146 aa16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 SEMA4FO95754 770 aa16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 HOXB3P14651 431 aaPredicted RBP16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 TFE3P19532 575 aaPredicted RBP16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 IRAK1P51617 712 aa16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 SLC14A1Q13336 389 aa16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 AUHQ13825 339 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 TRIP6Q15654 476 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 ZNF423Q2M1K9 1284 aa16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 FKBP15Q5T1M5 1219 aa16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 SASS6Q6UVJ0 657 aa16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 RAB44Q7Z6P3 723 aaPredicted RBP16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 C14orf80Q86SX3 495 aa16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 NAXDQ8IW45 347 aa16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 EPS8L1Q8TE68 723 aa16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 NPY6RQ99463 290 aa16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 PABPC3Q9H361 631 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 IL21RQ9HBE5 538 aa16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 FAM207AQ9NSI2 230 aaPredicted RBP16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 PIGVQ9NUD9 493 aa16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 FANCLQ9NW38 375 aa16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 SLCO3A1Q9UIG8 710 aa16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 STAP1Q9ULZ2 295 aa16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 DMXL2Q8TDJ6 3036 aa16.2■□□□□ 0.18
CCDC88B-205ENST00000472524 ITIH6Q6UXX5 1313 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 EDDM13A0A1B0GTR0 161 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 FAM221BA6H8Z2 402 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 MID1O15344 667 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 GFPT2O94808 682 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 FSBPO95073 299 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 TRIM16O95361 564 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 RDXP35241 583 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 GABRB2P47870 512 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 PSMD8P48556 350 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 POLR2FP61218 127 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 DEUP1Q05D60 604 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 SLC12A1Q13621 1099 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 HNRNPDQ14103 355 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 CST6Q15828 149 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 C9orf64Q5T6V5 341 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 NAA35Q5VZE5 725 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 CXorf57Q6NSI4 855 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 SND1Q7KZF4 910 aaKnown RBP eCLIP16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 XYLT1Q86Y38 959 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 MMAAQ8IVH4 418 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 PNPLA1Q8N8W4 532 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 KDM1BQ8NB78 822 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 MSANTD4Q8NCY6 345 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 SLC20A1Q8WUM9 679 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 CPA5Q8WXQ8 436 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 TBCBQ99426 244 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 TKTL2Q9H0I9 626 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 PCED1AQ9H1Q7 454 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 SGK2Q9HBY8 427 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 NLRC4Q9NPP4 1024 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 ANO10Q9NW15 660 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 FBXL12Q9NXK8 326 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 RRN3Q9NYV6 651 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 NCKAP1Q9Y2A7 1128 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 SNX10Q9Y5X0 201 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 SLCO1B1Q9Y6L6 691 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 ZFYVE26Q68DK2 2539 aa16.19■□□□□ 0.18
CCDC88B-205ENST00000472524 A0A1W2PP55 124 aa16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 TARSL2A2RTX5 802 aaKnown RBP16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 FAM47DPA6NHR8 397 aa16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 TAF4O00268 1085 aa16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 ADCY5O95622 1261 aa16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 LSM8O95777 96 aaKnown RBP16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 C7P10643 843 aa16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 NNMTP40261 264 aa16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 OXCT1P55809 520 aa16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 NOMO3P69849 1222 aa16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 MTA1Q13330 715 aa16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 ARID5BQ14865 1188 aa16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 STX1AQ16623 288 aa16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 BRMS1LQ5PSV4 323 aa16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 STK40Q8N2I9 435 aa16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 OR52K2Q8NGK3 314 aa16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 PCMTD1Q96MG8 357 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 ZDHHC5Q9C0B5 715 aa16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 WDCPQ9H6R7 721 aa16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 ANLNQ9NQW6 1124 aa16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 SERGEFQ9UGK8 458 aa16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 SCML1Q9UN30 329 aa16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 PCDHB9Q9Y5E1 797 aa16.18■□□□□ 0.18
CCDC88B-205ENST00000472524 PKD1L2Q7Z442 2459 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 EPHB6O15197 1021 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 RNASEH2AO75792 299 aaKnown RBP16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 CAPNS1P04632 268 aa16.17■□□□□ 0.18
CCDC88B-205ENST00000472524 FTH1P19P0C7X4 201 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms