RNA–Protein interactions for RNA: ENST00000469102.1

CMC1-208, Transcript of C-X9-C motif containing 1, human

TSL 1 (best)

Gene CMC1, Length 788 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CMC1-208	ENST00000469102	SPTLC2	O15270	562 aa		5	□□□□□ -1.61
CMC1-208	ENST00000469102	MSI1	O43347	362 aa	Known RBP	5	□□□□□ -1.61
CMC1-208	ENST00000469102	ACTL6B	O94805	426 aa		5	□□□□□ -1.61
CMC1-208	ENST00000469102	ITGA2B	P08514	1039 aa		5	□□□□□ -1.61
CMC1-208	ENST00000469102	RCAN1	P53805	252 aa		5	□□□□□ -1.61
CMC1-208	ENST00000469102	RHAG	Q02094	409 aa		5	□□□□□ -1.61
CMC1-208	ENST00000469102	PMPCA	Q10713	525 aa		5	□□□□□ -1.61
CMC1-208	ENST00000469102	ERV3-1	Q14264	604 aa		5	□□□□□ -1.61
CMC1-208	ENST00000469102	GALNT3	Q14435	633 aa		5	□□□□□ -1.61
CMC1-208	ENST00000469102	SEMA3A	Q14563	771 aa		5	□□□□□ -1.61
CMC1-208	ENST00000469102	GALNTL6	Q49A17	601 aa		5	□□□□□ -1.61
CMC1-208	ENST00000469102	ENTPD8	Q5MY95	495 aa		5	□□□□□ -1.61
CMC1-208	ENST00000469102	TTC22	Q5TAA0	569 aa		5	□□□□□ -1.61
CMC1-208	ENST00000469102	ATPAF1	Q5TC12	328 aa	Predicted RBP	5	□□□□□ -1.61
CMC1-208	ENST00000469102	NFRKB	Q6P4R8	1299 aa		5	□□□□□ -1.61
CMC1-208	ENST00000469102	LVRN	Q6Q4G3	990 aa		5	□□□□□ -1.61
CMC1-208	ENST00000469102	TMEM200A	Q86VY9	491 aa		5	□□□□□ -1.61
CMC1-208	ENST00000469102	ATG16L2	Q8NAA4	619 aa		5	□□□□□ -1.61
CMC1-208	ENST00000469102	ARHGAP39	Q9C0H5	1083 aa		5	□□□□□ -1.61
CMC1-208	ENST00000469102	MAGEH1	Q9H213	219 aa		5	□□□□□ -1.61
CMC1-208	ENST00000469102	PABPC3	Q9H361	631 aa	Known RBP	5	□□□□□ -1.61
CMC1-208	ENST00000469102	MRPL44	Q9H9J2	332 aa	Known RBP	5	□□□□□ -1.61
CMC1-208	ENST00000469102	SEPSECS	Q9HD40	501 aa	Known RBP	5	□□□□□ -1.61
CMC1-208	ENST00000469102	SIRT3	Q9NTG7	399 aa	Predicted RBP	5	□□□□□ -1.61
CMC1-208	ENST00000469102	HERC5	Q9UII4	1024 aa	Known RBP	5	□□□□□ -1.61
CMC1-208	ENST00000469102	PKP3	Q9Y446	797 aa		5	□□□□□ -1.61
CMC1-208	ENST00000469102	ACKR2	O00590	384 aa		4.99	□□□□□ -1.61
CMC1-208	ENST00000469102	TNFRSF13B	O14836	293 aa	Predicted RBP	4.99	□□□□□ -1.61
CMC1-208	ENST00000469102	SKAP2	O75563	359 aa	Predicted RBP	4.99	□□□□□ -1.61
CMC1-208	ENST00000469102	HOXB6	P17509	224 aa	Known RBP	4.99	□□□□□ -1.61
CMC1-208	ENST00000469102	PRPH2	P23942	346 aa		4.99	□□□□□ -1.61
CMC1-208	ENST00000469102	CDKN2A	P42771	156 aa	Known RBP	4.99	□□□□□ -1.61
CMC1-208	ENST00000469102	PGGT1B	P53609	377 aa		4.99	□□□□□ -1.61
CMC1-208	ENST00000469102	UBE4A	Q14139	1066 aa		4.99	□□□□□ -1.61
CMC1-208	ENST00000469102	KLB	Q86Z14	1044 aa		4.99	□□□□□ -1.61
CMC1-208	ENST00000469102	TMEM217	Q8N7C4	229 aa		4.99	□□□□□ -1.61
CMC1-208	ENST00000469102	STT3B	Q8TCJ2	826 aa		4.99	□□□□□ -1.61
CMC1-208	ENST00000469102	SLC2A12	Q8TD20	617 aa		4.99	□□□□□ -1.61
CMC1-208	ENST00000469102	ADAMTS15	Q8TE58	950 aa		4.99	□□□□□ -1.61
CMC1-208	ENST00000469102	HDHD5	Q9BXW7	423 aa		4.99	□□□□□ -1.61
CMC1-208	ENST00000469102	TASP1	Q9H6P5	420 aa		4.99	□□□□□ -1.61
CMC1-208	ENST00000469102	SLC22A11	Q9NSA0	550 aa		4.99	□□□□□ -1.61
CMC1-208	ENST00000469102	LRP12	Q9Y561	859 aa		4.99	□□□□□ -1.61
CMC1-208	ENST00000469102	EVPL	Q92817	2033 aa		4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	TRBV5-7	A0A0A0MS05	114 aa		4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	EFCAB8	A8MWE9	144 aa		4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	GTPBP1	O00178	669 aa	Known RBP	4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	LCK	P06239	509 aa		4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	AP2B1	P63010	937 aa		4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	DCTN1	Q14203	1278 aa		4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	TBRG1	Q3YBR2	411 aa		4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	WASHC2D	Q5SRD0	308 aa		4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	UBAP2	Q5T6F2	1119 aa	Known RBP	4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	SLC30A9	Q6PML9	568 aa		4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	ENDOV	Q8N8Q3	282 aa	Known RBP	4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	LPAR1	Q92633	364 aa		4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	ZNF419	Q96HQ0	510 aa	Predicted RBP	4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	URB1-AS1	Q96HZ7	61 aa		4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	RMDN3	Q96TC7	470 aa		4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	BRD8	Q9H0E9	1235 aa		4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	HIPK2	Q9H2X6	1198 aa		4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	ARL15	Q9NXU5	204 aa		4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	C19orf53	Q9UNZ5	99 aa	Predicted RBP	4.98	□□□□□ -1.61
CMC1-208	ENST00000469102	TCRBV7S3A2	A0A539	114 aa		4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	GRM8	O00222	908 aa		4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	HOXA11	P31270	313 aa	Predicted RBP	4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	STAT1	P42224	750 aa		4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	ICA1	Q05084	483 aa		4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	KLHL22	Q53GT1	634 aa		4.97	□□□□□ -1.61
CMC1-208	ENST00000469102		Q5PR19	223 aa		4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	SULT6B1	Q6IMI4	303 aa		4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	PARM1	Q6UWI2	310 aa		4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	RAB11FIP2	Q7L804	512 aa		4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	ANKS1B	Q7Z6G8	1248 aa		4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	CTU1	Q7Z7A3	348 aa	Known RBP	4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	SLC25A41	Q8N5S1	370 aa		4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	KDM1B	Q8NB78	822 aa		4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	WASF1	Q92558	559 aa		4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	RBM38	Q9H0Z9	239 aa	Known RBP	4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	ISCU	Q9H1K1	167 aa		4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	ELAC1	Q9H777	363 aa	Known RBP	4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	PDE11A	Q9HCR9	933 aa		4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	PNRC2	Q9NPJ4	139 aa	Known RBP	4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	PLCB1	Q9NQ66	1216 aa		4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	TMEM248	Q9NWD8	314 aa		4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	LRFN1	Q9P244	771 aa		4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	TBC1D14	Q9P2M4	693 aa		4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	DAAM1	Q9Y4D1	1078 aa		4.97	□□□□□ -1.61
CMC1-208	ENST00000469102	FAM90A20P	A6NIJ5	464 aa		4.96	□□□□□ -1.62
CMC1-208	ENST00000469102	KLKB1	P03952	638 aa		4.96	□□□□□ -1.62
CMC1-208	ENST00000469102	HOXB9	P17482	250 aa	Predicted RBP	4.96	□□□□□ -1.62
CMC1-208	ENST00000469102	CHRNA5	P30532	468 aa		4.96	□□□□□ -1.62
CMC1-208	ENST00000469102	SLC16A2	P36021	539 aa		4.96	□□□□□ -1.62
CMC1-208	ENST00000469102	RFX5	P48382	616 aa	Predicted RBP	4.96	□□□□□ -1.62
CMC1-208	ENST00000469102	RASSF2	P50749	326 aa		4.96	□□□□□ -1.62
CMC1-208	ENST00000469102	POLE2	P56282	527 aa		4.96	□□□□□ -1.62
CMC1-208	ENST00000469102	CDK18	Q07002	472 aa		4.96	□□□□□ -1.62
CMC1-208	ENST00000469102	PKP1	Q13835	747 aa		4.96	□□□□□ -1.62
CMC1-208	ENST00000469102	ALG10	Q5BKT4	473 aa		4.96	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms