RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 ALG14Q96F25 216 aa12.41□□□□□ -0.42
USP40-210ENST00000454354 SPAG5Q96R06 1193 aa12.41□□□□□ -0.42
USP40-210ENST00000454354 ERGIC2Q96RQ1 377 aa12.41□□□□□ -0.42
USP40-210ENST00000454354 TBCBQ99426 244 aa12.41□□□□□ -0.42
USP40-210ENST00000454354 TKTL2Q9H0I9 626 aa12.41□□□□□ -0.42
USP40-210ENST00000454354 MTG2Q9H4K7 406 aa12.41□□□□□ -0.42
USP40-210ENST00000454354 WDCPQ9H6R7 721 aa12.41□□□□□ -0.42
USP40-210ENST00000454354 NLRC4Q9NPP4 1024 aa12.41□□□□□ -0.42
USP40-210ENST00000454354 ANLNQ9NQW6 1124 aa12.41□□□□□ -0.42
USP40-210ENST00000454354 VANGL2Q9ULK5 521 aa12.41□□□□□ -0.42
USP40-210ENST00000454354 TBC1D30Q9Y2I9 924 aa12.41□□□□□ -0.42
USP40-210ENST00000454354 AKAP13Q12802 2813 aa12.41□□□□□ -0.42
USP40-210ENST00000454354 FRYQ5TBA9 3013 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 A0A1B0GTW7 788 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 TTC34A8MYJ7 566 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 GOLGA8SH3BPF8 625 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 GJB3O75712 270 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 SYPP08247 313 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 MAOBP27338 520 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 MZF1P28698 734 aaPredicted RBP12.4□□□□□ -0.42
USP40-210ENST00000454354 PMLP29590 882 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 ACSL1P33121 698 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 GGCXP38435 758 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 STAT1P42224 750 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 MAPK8P45983 427 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 STK19P49842 368 aaPredicted RBP12.4□□□□□ -0.42
USP40-210ENST00000454354 NOVA1P51513 510 aaKnown RBP12.4□□□□□ -0.42
USP40-210ENST00000454354 CDH4P55283 916 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 GSCP56915 257 aaPredicted RBP12.4□□□□□ -0.42
USP40-210ENST00000454354 RNASE9P60153 205 aaKnown RBP12.4□□□□□ -0.42
USP40-210ENST00000454354 DEUP1Q05D60 604 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 C2CD6Q53TS8 623 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 ARTNQ5T4W7 220 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 N4BP2L1Q5TBK1 243 aaPredicted RBP12.4□□□□□ -0.42
USP40-210ENST00000454354 SH3PXD2AQ5TCZ1 1133 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 RNF219Q5W0B1 726 aaPredicted RBP12.4□□□□□ -0.42
USP40-210ENST00000454354 PSAPL1Q6NUJ1 521 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 TRIM72Q6ZMU5 477 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 SND1Q7KZF4 910 aaKnown RBP eCLIP12.4□□□□□ -0.42
USP40-210ENST00000454354 C14orf80Q86SX3 495 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 FAM124AQ86V42 546 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 DHX40Q8IX18 779 aaKnown RBP12.4□□□□□ -0.42
USP40-210ENST00000454354 MINDY1Q8N5J2 469 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 NEK11Q8NG66 645 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 C1orf74Q96LT6 269 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 PPP1R9BQ96SB3 815 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 BPIFA3Q9BQP9 254 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 ZDHHC5Q9C0B5 715 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 BTBD1Q9H0C5 482 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 PABPC3Q9H361 631 aaKnown RBP12.4□□□□□ -0.42
USP40-210ENST00000454354 C6orf106Q9H6K1 298 aaPredicted RBP12.4□□□□□ -0.42
USP40-210ENST00000454354 SGK2Q9HBY8 427 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 FSCN3Q9NQT6 498 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 DNAAF2Q9NVR5 837 aaKnown RBP12.4□□□□□ -0.42
USP40-210ENST00000454354 SLCO3A1Q9UIG8 710 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 OR51B4Q9Y5P0 310 aa12.4□□□□□ -0.42
USP40-210ENST00000454354 IGLV3-10A0A075B6K4 115 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 C10orf142B7Z368 130 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 OPHN1O60890 802 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 RNASEH1O60930 286 aaKnown RBP12.39□□□□□ -0.43
USP40-210ENST00000454354 ENDOD1O94919 500 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 SEMA4FO95754 770 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 UNGP13051 313 aaPredicted RBP12.39□□□□□ -0.43
USP40-210ENST00000454354 CEACAM1P13688 526 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 RDXP35241 583 aaKnown RBP12.39□□□□□ -0.43
USP40-210ENST00000454354 ATXN3P54252 364 aaPredicted RBP12.39□□□□□ -0.43
USP40-210ENST00000454354 UBXN1Q04323 297 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 SFSWAPQ12872 951 aaKnown RBP12.39□□□□□ -0.43
USP40-210ENST00000454354 PTP4A2Q12974 167 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 SEMA3BQ13214 749 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 CST6Q15828 149 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 UAP1L1Q3KQV9 507 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 PIP4P1Q86T03 277 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 ZCCHC9Q8N567 271 aaKnown RBP12.39□□□□□ -0.43
USP40-210ENST00000454354 AOPEPQ8N6M6 819 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 OR52K2Q8NGK3 314 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 FRS2Q8WU20 508 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 PTPRN2Q92932 1015 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 RPL10LQ96L21 214 aaKnown RBP12.39□□□□□ -0.43
USP40-210ENST00000454354 CFAP57Q96MR6 1250 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 FAM129BQ96TA1 746 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 FEM1AQ9BSK4 669 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 GTPBP2Q9BX10 602 aaKnown RBP12.39□□□□□ -0.43
USP40-210ENST00000454354 OSGEPQ9NPF4 335 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 METTL5Q9NRN9 209 aaKnown RBP12.39□□□□□ -0.43
USP40-210ENST00000454354 ADAMTS1Q9UHI8 967 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.39□□□□□ -0.43
USP40-210ENST00000454354 CACNA1BQ00975 2339 aa12.39□□□□□ -0.43
USP40-210ENST00000454354 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.38□□□□□ -0.43
USP40-210ENST00000454354 DRGXA6NNA5 263 aa12.38□□□□□ -0.43
USP40-210ENST00000454354 GIPC1O14908 333 aa12.38□□□□□ -0.43
USP40-210ENST00000454354 BCAT2O15382 392 aaPredicted RBP12.38□□□□□ -0.43
USP40-210ENST00000454354 ATP9BO43861 1147 aa12.38□□□□□ -0.43
USP40-210ENST00000454354 CNTN5O94779 1100 aa12.38□□□□□ -0.43
USP40-210ENST00000454354 ADH1BP00325 375 aa12.38□□□□□ -0.43
USP40-210ENST00000454354 ATP1A3P13637 1013 aa12.38□□□□□ -0.43
USP40-210ENST00000454354 CDK11BP21127 795 aaKnown RBP12.38□□□□□ -0.43
USP40-210ENST00000454354 KCNA4P22459 653 aa12.38□□□□□ -0.43
USP40-210ENST00000454354 NNMTP40261 264 aa12.38□□□□□ -0.43
USP40-210ENST00000454354 SHC2P98077 582 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms