RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 INSL6Q9Y581 213 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 KCNK1O00180 336 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 MATN3O15232 486 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 ACSL4O60488 711 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 RAMP2O60895 175 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 FGF19O95750 216 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 LATS1O95835 1130 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 POLBP06746 335 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 ADH1AP07327 375 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 LSP1P33241 339 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 USP46P62068 366 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 DMTNQ08495 405 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 WASHC5Q12768 1159 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 ILF2Q12905 390 aaKnown RBP6.17□□□□□ -1.42
VPS50-205ENST00000441602 LAMB3Q13751 1172 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 HP1BP3Q5SSJ5 553 aaPredicted RBP6.17□□□□□ -1.42
VPS50-205ENST00000441602 TTC39BQ5VTQ0 682 aaPredicted RBP6.17□□□□□ -1.42
VPS50-205ENST00000441602 ZNF449Q6P9G9 518 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 TAS1R1Q7RTX1 841 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 CPLX4Q7Z7G2 160 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 SLC26A11Q86WA9 606 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 LRRC6Q86X45 466 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 SRRM1Q8IYB3 904 aaKnown RBP6.17□□□□□ -1.42
VPS50-205ENST00000441602 TCEAL8Q8IYN2 117 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 UMODL1-AS1Q8N2C9 162 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 PDCD7Q8N8D1 485 aaKnown RBP6.17□□□□□ -1.42
VPS50-205ENST00000441602 DEPDC1BQ8WUY9 529 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 BCL7CQ8WUZ0 217 aaPredicted RBP6.17□□□□□ -1.42
VPS50-205ENST00000441602 FATE1Q969F0 183 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 CELF6Q96J87 481 aaKnown RBP6.17□□□□□ -1.42
VPS50-205ENST00000441602 TEKT5Q96M29 485 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 PAFAH2Q99487 392 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 SSU72Q9NP77 194 aaKnown RBP6.17□□□□□ -1.42
VPS50-205ENST00000441602 TMEM248Q9NWD8 314 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 TBK1Q9UHD2 729 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 IPO11Q9UI26 975 aaKnown RBP6.17□□□□□ -1.42
VPS50-205ENST00000441602 NUDT5Q9UKK9 219 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 PCDHA11Q9Y5I1 949 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 SNX10Q9Y5X0 201 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 TEX264Q9Y6I9 313 aa6.17□□□□□ -1.42
VPS50-205ENST00000441602 TCRBV7S3A2A0A539 114 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 GMNCA6NCL1 334 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 EBAG9O00559 213 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 ABLIM3O94929 683 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 SNRPAP09012 282 aaKnown RBP6.16□□□□□ -1.42
VPS50-205ENST00000441602 CCNB1P14635 433 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 CHN1P15882 459 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 SSTR1P30872 391 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 LBX1P52954 281 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 SESN2P58004 480 aaPredicted RBP6.16□□□□□ -1.42
VPS50-205ENST00000441602 DEFB103AP81534 67 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 CDH17Q12864 832 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 SPARCL1Q14515 664 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 SNX30Q5VWJ9 437 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 RAP1GAP2Q684P5 730 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 TTC9BQ8N6N2 239 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 PPM1NQ8N819 430 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 ANKRD42Q8N9B4 389 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 BCAS4Q8TDM0 211 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 FCRL5Q96RD9 977 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 LBHD1Q9BQE6 289 aaPredicted RBP6.16□□□□□ -1.42
VPS50-205ENST00000441602 CLSTN3Q9BQT9 956 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 GLOD4Q9HC38 313 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 HCSTQ9UBK5 93 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 VANGL2Q9ULK5 521 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 MFHAS1Q9Y4C4 1052 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 FAM47DPA6NHR8 397 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 SOAT2O75908 522 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 ACRP10323 421 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 MBL2P11226 248 aaPredicted RBP6.16□□□□□ -1.42
VPS50-205ENST00000441602 PFKLP17858 780 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 RPL17P18621 184 aaKnown RBP6.16□□□□□ -1.42
VPS50-205ENST00000441602 PAMP19021 973 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 NFKB1P19838 968 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 GUCY1A3Q02108 690 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 DNAJC3Q13217 504 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 EIF4EBP2Q13542 120 aaPredicted RBP6.16□□□□□ -1.42
VPS50-205ENST00000441602 FASTKD3Q14CZ7 662 aaKnown RBP6.16□□□□□ -1.42
VPS50-205ENST00000441602 ZSCAN26Q16670 478 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 MS4A13Q5J8X5 152 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 CYS1Q717R9 158 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 RTL10Q7L3V2 364 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 TMEM173Q86WV6 379 aaPredicted RBP6.16□□□□□ -1.42
VPS50-205ENST00000441602 TRIM42Q8IWZ5 723 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 LGI2Q8N0V4 545 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 CCDC33Q8N5R6 958 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 PHOSPHO2Q8TCD6 241 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 GPR152Q8TDT2 470 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 MRRFQ96E11 262 aaKnown RBP6.16□□□□□ -1.42
VPS50-205ENST00000441602 MYRFLQ96LU7 910 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 AGAP3Q96P47 875 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 MAGEB5Q9BZ81 275 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 SLC39A8Q9C0K1 460 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 RXFP1Q9HBX9 757 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 ENTPD7Q9NQZ7 604 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 RBM22Q9NW64 420 aaKnown RBP eCLIP6.16□□□□□ -1.42
VPS50-205ENST00000441602 DPP7Q9UHL4 492 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 RABGEF1Q9UJ41 708 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 ZNF180Q9UJW8 692 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 ZNF510Q9Y2H8 683 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms