RNA–Protein interactions for RNA: ENST00000433888.5

PTPN4-205, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 954 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-205	ENST00000433888	TMEM88	Q6PEY1	159 aa		4.17	□□□□□ -1.74
PTPN4-205	ENST00000433888	CLIP4	Q8N3C7	705 aa		4.17	□□□□□ -1.74
PTPN4-205	ENST00000433888	SLC25A41	Q8N5S1	370 aa		4.17	□□□□□ -1.74
PTPN4-205	ENST00000433888	ADAD1	Q96M93	576 aa	Known RBP	4.17	□□□□□ -1.74
PTPN4-205	ENST00000433888	OSBPL5	Q9H0X9	879 aa	Predicted RBP	4.17	□□□□□ -1.74
PTPN4-205	ENST00000433888	HELLS	Q9NRZ9	838 aa		4.17	□□□□□ -1.74
PTPN4-205	ENST00000433888	KCNG2	Q9UJ96	466 aa		4.17	□□□□□ -1.74
PTPN4-205	ENST00000433888	NOTCH3	Q9UM47	2321 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	C3orf70	A6NLC5	250 aa	Predicted RBP	4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	SRRM3	A6NNA2	597 aa	Predicted RBP	4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	SMTNL1	A8MU46	457 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	PCDH17	O14917	1159 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	GRID2	O43424	1007 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	DDN	O94850	711 aa	Predicted RBP	4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	CAMTA2	O94983	1202 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	HARS	P12081	509 aa	Known RBP	4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	PEPD	P12955	493 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	ZNF12	P17014	697 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	CHRNB2	P17787	502 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	TNFSF8	P32971	234 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	PMS2	P54278	862 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	RPL15	P61313	204 aa	Known RBP	4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	DSC1	Q08554	894 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	GALNT3	Q14435	633 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	IZUMO4	Q1ZYL8	232 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	DNTTIP2	Q5QJE6	756 aa	Known RBP	4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	OTUD1	Q5VV17	481 aa	Predicted RBP	4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	C9orf57	Q5W0N0	161 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	ERAP2	Q6P179	960 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888		Q6ZSV7	163 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	TTC30A	Q86WT1	665 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	DGKH	Q86XP1	1220 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	POLDIP3	Q9BY77	421 aa	Known RBP	4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	B3GNT4	Q9C0J1	378 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	STARD7	Q9NQZ5	370 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	FZD10	Q9ULW2	581 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	ICAM5	Q9UMF0	924 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	KIF26B	Q2KJY2	2108 aa		4.16	□□□□□ -1.74
PTPN4-205	ENST00000433888	MCIDAS	D6RGH6	385 aa		4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	NTN3	O00634	580 aa	Predicted RBP	4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	MSI1	O43347	362 aa	Known RBP	4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	ALDOA	P04075	364 aa	Known RBP	4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	ANXA6	P08133	673 aa		4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	TAS2R50	P59544	299 aa		4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	SEC61A1	P61619	476 aa	Known RBP	4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	SLC35G1	Q2M3R5	365 aa		4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	ALG10	Q5BKT4	473 aa		4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	ALG10B	Q5I7T1	473 aa		4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	AAGAB	Q6PD74	315 aa		4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	SPSB3	Q6PJ21	355 aa		4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	ZNF367	Q7RTV3	350 aa		4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	TRABD2A	Q86V40	505 aa		4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	FAM217A	Q8IXS0	508 aa		4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	BRI3BP	Q8WY22	251 aa		4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	ZNF419	Q96HQ0	510 aa	Predicted RBP	4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	TBCB	Q99426	244 aa		4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	FRMD8	Q9BZ67	464 aa	Predicted RBP	4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	NECTIN3	Q9NQS3	549 aa		4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	ERRFI1	Q9UJM3	462 aa	Predicted RBP	4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	FBXO4	Q9UKT5	387 aa		4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	ZBTB1	Q9Y2K1	713 aa		4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	RAI2	Q9Y5P3	530 aa		4.15	□□□□□ -1.75
PTPN4-205	ENST00000433888	LDB3	O75112	727 aa		4.14	□□□□□ -1.75
PTPN4-205	ENST00000433888	ZBTB11	O95625	1053 aa	Predicted RBP	4.14	□□□□□ -1.75
PTPN4-205	ENST00000433888	GLP2R	O95838	553 aa		4.14	□□□□□ -1.75
PTPN4-205	ENST00000433888	ZBTB16	Q05516	673 aa		4.14	□□□□□ -1.75
PTPN4-205	ENST00000433888	COASY	Q13057	564 aa		4.14	□□□□□ -1.75
PTPN4-205	ENST00000433888	PKP1	Q13835	747 aa		4.14	□□□□□ -1.75
PTPN4-205	ENST00000433888	TDRD12	Q587J7	1177 aa	Known RBP	4.14	□□□□□ -1.75
PTPN4-205	ENST00000433888	FAM76B	Q5HYJ3	339 aa		4.14	□□□□□ -1.75
PTPN4-205	ENST00000433888	ANKRD40	Q6AI12	368 aa		4.14	□□□□□ -1.75
PTPN4-205	ENST00000433888	TXLNB	Q8N3L3	684 aa		4.14	□□□□□ -1.75
PTPN4-205	ENST00000433888	BICD2	Q8TD16	824 aa		4.14	□□□□□ -1.75
PTPN4-205	ENST00000433888	EPS8L2	Q9H6S3	715 aa		4.14	□□□□□ -1.75
PTPN4-205	ENST00000433888	SLC52A1	Q9NWF4	448 aa		4.14	□□□□□ -1.75
PTPN4-205	ENST00000433888	MAGED2	Q9UNF1	606 aa	Predicted RBP	4.14	□□□□□ -1.75
PTPN4-205	ENST00000433888	SLC12A4	Q9UP95	1085 aa		4.14	□□□□□ -1.75
PTPN4-205	ENST00000433888	FGF18	O76093	207 aa		4.13	□□□□□ -1.75
PTPN4-205	ENST00000433888	PRSS2	P07478	247 aa		4.13	□□□□□ -1.75
PTPN4-205	ENST00000433888	FCGR1A	P12314	374 aa		4.13	□□□□□ -1.75
PTPN4-205	ENST00000433888	ATF3	P18847	181 aa		4.13	□□□□□ -1.75
PTPN4-205	ENST00000433888	GNLY	P22749	145 aa		4.13	□□□□□ -1.75
PTPN4-205	ENST00000433888	CHRNA5	P30532	468 aa		4.13	□□□□□ -1.75
PTPN4-205	ENST00000433888	FAM3B	P58499	235 aa	Predicted RBP	4.13	□□□□□ -1.75
PTPN4-205	ENST00000433888	RHAG	Q02094	409 aa		4.13	□□□□□ -1.75
PTPN4-205	ENST00000433888	TRAF3	Q13114	568 aa		4.13	□□□□□ -1.75
PTPN4-205	ENST00000433888	PMS2P11	Q13670	270 aa		4.13	□□□□□ -1.75
PTPN4-205	ENST00000433888	C1QTNF4	Q9BXJ3	329 aa		4.13	□□□□□ -1.75
PTPN4-205	ENST00000433888	RAB21	Q9UL25	225 aa		4.13	□□□□□ -1.75
PTPN4-205	ENST00000433888	SLC4A4	Q9Y6R1	1079 aa		4.13	□□□□□ -1.75
PTPN4-205	ENST00000433888	MS4A18	H0YCH9	400 aa		4.12	□□□□□ -1.75
PTPN4-205	ENST00000433888	NCK2	O43639	380 aa		4.12	□□□□□ -1.75
PTPN4-205	ENST00000433888	RPP40	O75818	363 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-205	ENST00000433888	EEF1G	P26641	437 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-205	ENST00000433888	GRK5	P34947	590 aa		4.12	□□□□□ -1.75
PTPN4-205	ENST00000433888	CLCN5	P51795	746 aa		4.12	□□□□□ -1.75
PTPN4-205	ENST00000433888	EEF1A2	Q05639	463 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-205	ENST00000433888	HNF4G	Q14541	408 aa		4.12	□□□□□ -1.75
PTPN4-205	ENST00000433888	RAB30	Q15771	203 aa		4.12	□□□□□ -1.75
PTPN4-205	ENST00000433888	FSCB	Q5H9T9	825 aa		4.12	□□□□□ -1.75

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