RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 MID2Q9UJV3 735 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 CSADQ9Y600 493 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 AK5Q9Y6K8 562 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 RALGAPA2Q2PPJ7 1873 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 UNCXA6NJT0 531 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 VTNP04004 478 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 APOA4P06727 396 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 ADSLP30566 484 aaPredicted RBP10.01□□□□□ -0.81
CD44-206ENST00000415148 HADHAP40939 763 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 PGGT1BP53609 377 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 AIF1P55008 147 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 ARHGAP1Q07960 439 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 IFRD2Q12894 506 aaPredicted RBP10.01□□□□□ -0.81
CD44-206ENST00000415148 OLIG2Q13516 323 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 PDK3Q15120 406 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 CES3Q6UWW8 571 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 BNIPLQ7Z465 357 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 TMEM135Q86UB9 458 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 LCA5Q86VQ0 697 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 METTL25Q8N6Q8 603 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 AGR3Q8TD06 166 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 MAPK15Q8TD08 544 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 TRPM4Q8TD43 1214 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 NLRP7Q8WX94 980 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 NT5C3BQ969T7 300 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 TSPAN18Q96SJ8 248 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 COG4Q9H9E3 785 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 SNX15Q9NRS6 342 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 GPRC5DQ9NZD1 345 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 VPS28Q9UK41 221 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 PRPF19Q9UMS4 504 aaKnown RBP10.01□□□□□ -0.81
CD44-206ENST00000415148 G3BP2Q9UN86 482 aaKnown RBP10.01□□□□□ -0.81
CD44-206ENST00000415148 EVPLQ92817 2033 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 ERI2A8K979 691 aaKnown RBP10.01□□□□□ -0.81
CD44-206ENST00000415148 CXCL11O14625 94 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 VILLO15195 856 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 MFSD11O43934 449 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 TRIM13O60858 407 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 PABPC4LP0CB38 370 aaKnown RBP10.01□□□□□ -0.81
CD44-206ENST00000415148 THRAP10827 490 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 LCP1P13796 627 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 NCF2P19878 526 aaPredicted RBP10.01□□□□□ -0.81
CD44-206ENST00000415148 DNAJB1P25685 340 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 ABCG1P45844 678 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 LIMK2P53671 638 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 KLF10Q13118 480 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 ITGA9Q13797 1035 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 PDZD4Q76G19 769 aaPredicted RBP10.01□□□□□ -0.81
CD44-206ENST00000415148 TMC7Q7Z402 723 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 CLEC14AQ86T13 490 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 SPATA24Q86W54 205 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 ZNF567Q8N184 647 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 DCLK2Q8N568 766 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 C7orf31Q8N865 590 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 RDH11Q8TC12 318 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 CLEC4CQ8WTT0 213 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 EMID1Q96A84 441 aaPredicted RBP10.01□□□□□ -0.81
CD44-206ENST00000415148 PGBD4Q96DM1 585 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 CNDP1Q96KN2 507 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 SNX27Q96L92 541 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 SERPINI1Q99574 410 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 LPIN3Q9BQK8 851 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 CEP41Q9BYV8 373 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 BRD8Q9H0E9 1235 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 VCX3AQ9NNX9 186 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 LMCD1Q9NZU5 365 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 C6orf203Q9P0P8 240 aaPredicted RBP10.01□□□□□ -0.81
CD44-206ENST00000415148 RBPJLQ9UBG7 517 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 BCAP29Q9UHQ4 241 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 INPP5FQ9Y2H2 1132 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 RPS6KL1Q9Y6S9 549 aa10.01□□□□□ -0.81
CD44-206ENST00000415148 PAPPA2Q9BXP8 1791 aa10□□□□□ -0.81
CD44-206ENST00000415148 CITO14578 2027 aa10□□□□□ -0.81
CD44-206ENST00000415148 G3V2L1 256 aa10□□□□□ -0.81
CD44-206ENST00000415148 XPO1O14980 1071 aaKnown RBP10□□□□□ -0.81
CD44-206ENST00000415148 NCAM2O15394 837 aa10□□□□□ -0.81
CD44-206ENST00000415148 DCXO43602 365 aa10□□□□□ -0.81
CD44-206ENST00000415148 DAB1O75553 588 aa10□□□□□ -0.81
CD44-206ENST00000415148 HSPA4LO95757 839 aa10□□□□□ -0.81
CD44-206ENST00000415148 ERVK-10P10266 1014 aa10□□□□□ -0.81
CD44-206ENST00000415148 CYP2C9P11712 490 aa10□□□□□ -0.81
CD44-206ENST00000415148 GLDCP23378 1020 aa10□□□□□ -0.81
CD44-206ENST00000415148 PSMB4P28070 264 aa10□□□□□ -0.81
CD44-206ENST00000415148 NOS2P35228 1153 aa10□□□□□ -0.81
CD44-206ENST00000415148 SERPINB6P35237 376 aa10□□□□□ -0.81
CD44-206ENST00000415148 GNL1P36915 607 aaPredicted RBP10□□□□□ -0.81
CD44-206ENST00000415148 CCR10P46092 362 aa10□□□□□ -0.81
CD44-206ENST00000415148 GTF2A2P52657 109 aa10□□□□□ -0.81
CD44-206ENST00000415148 ATXN3P54252 364 aaPredicted RBP10□□□□□ -0.81
CD44-206ENST00000415148 CSE1LP55060 971 aaKnown RBP10□□□□□ -0.81
CD44-206ENST00000415148 CDC42EP1Q00587 391 aa10□□□□□ -0.81
CD44-206ENST00000415148 FOLH1Q04609 750 aa10□□□□□ -0.81
CD44-206ENST00000415148 TBL3Q12788 808 aaKnown RBP10□□□□□ -0.81
CD44-206ENST00000415148 PCBP1Q15365 356 aaKnown RBP eCLIP10□□□□□ -0.81
CD44-206ENST00000415148 MMEL1Q495T6 779 aa10□□□□□ -0.81
CD44-206ENST00000415148 PPM1LQ5SGD2 360 aa10□□□□□ -0.81
CD44-206ENST00000415148 C9orf57Q5W0N0 161 aa10□□□□□ -0.81
CD44-206ENST00000415148 ALKAL1Q6UXT8 129 aa10□□□□□ -0.81
CD44-206ENST00000415148 NAPRTQ6XQN6 538 aa10□□□□□ -0.81
CD44-206ENST00000415148 SPNS2Q8IVW8 549 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms