RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 TCAF2A6NFQ2 919 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 C5orf60A6NFR6 353 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 RNF103O00237 685 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 DFFAO00273 331 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 LEFTY2O00292 366 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 GFRA2O00451 464 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 ZNF197O14709 1029 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 NDC80O14777 642 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 SCAMP3O14828 347 aaKnown RBP6.82□□□□□ -1.32
VPS41-204ENST00000413141 MTSS1O43312 755 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 GCATO75600 419 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 STK10O94804 968 aaKnown RBP6.82□□□□□ -1.32
VPS41-204ENST00000413141 PRAMEF12O95522 483 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 CEBPBP17676 345 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 AVPR1AP37288 418 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 TNNT3P45378 269 aaPredicted RBP6.82□□□□□ -1.32
VPS41-204ENST00000413141 RGS19P49795 217 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 SGSHP51688 502 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 NDST2P52849 883 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 PLTPP55058 493 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 BASP1P80723 227 aaKnown RBP6.82□□□□□ -1.32
VPS41-204ENST00000413141 CAV1Q03135 178 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 ZNF33AQ06730 810 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 WASHC5Q12768 1159 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 HYAL1Q12794 435 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 USP4Q13107 963 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 MORF4L2Q15014 288 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 TCEAL5Q5H9L2 206 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 ADGRF1Q5T601 910 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 RNASEH2BQ5TBB1 312 aaKnown RBP6.82□□□□□ -1.32
VPS41-204ENST00000413141 TTC39BQ5VTQ0 682 aaPredicted RBP6.82□□□□□ -1.32
VPS41-204ENST00000413141 ARHGAP36Q6ZRI8 547 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 HTR3DQ70Z44 454 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 TMC3Q7Z5M5 1100 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 CCDC13Q8IYE1 715 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 CMTM8Q8IZV2 173 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 CFAP52Q8N1V2 620 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 EFHBQ8N7U6 833 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 C12orf76Q8N812 135 aaPredicted RBP6.82□□□□□ -1.32
VPS41-204ENST00000413141 CCNYQ8ND76 341 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 CCDC110Q8TBZ0 833 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 DEPDC1BQ8WUY9 529 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 SLC39A7Q92504 469 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 CPT1BQ92523 772 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 SMG7Q92540 1137 aaKnown RBP6.82□□□□□ -1.32
VPS41-204ENST00000413141 LRRC45Q96CN5 670 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 GDAP1L1Q96MZ0 367 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 SPATA13Q96N96 652 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 PHF12Q96QT6 1004 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 DDX50Q9BQ39 737 aaKnown RBP6.82□□□□□ -1.32
VPS41-204ENST00000413141 FERMT1Q9BQL6 677 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 SLC39A8Q9C0K1 460 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 SMG9Q9H0W8 520 aaKnown RBP6.82□□□□□ -1.32
VPS41-204ENST00000413141 ADAM7Q9H2U9 754 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 RETREG1Q9H6L5 497 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 TASP1Q9H6P5 420 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 PIDD1Q9HB75 910 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 DONSONQ9NYP3 566 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 CFAP97Q9P2B7 532 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 MTRF1LQ9UGC7 380 aaKnown RBP6.82□□□□□ -1.32
VPS41-204ENST00000413141 ZMYM5Q9UJ78 669 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 TPX2Q9ULW0 747 aaKnown RBP6.82□□□□□ -1.32
VPS41-204ENST00000413141 SHOC2Q9UQ13 582 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 CCL26Q9Y258 94 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 SH3BP1Q9Y3L3 701 aa6.82□□□□□ -1.32
VPS41-204ENST00000413141 ZFP37Q9Y6Q3 630 aaPredicted RBP6.82□□□□□ -1.32
VPS41-204ENST00000413141 E2F8A0AVK6 867 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 RASA4BC9J798 803 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 KCNK1O00180 336 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 TRDMT1O14717 391 aaKnown RBP6.81□□□□□ -1.32
VPS41-204ENST00000413141 LINC01565O15544 149 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 RASA4O43374 803 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 MAFKO60675 156 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 OPHN1O60890 802 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 RAMP2O60895 175 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 CLDN11O75508 207 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 TMEM63AO94886 807 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 METTL18O95568 372 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 TCF3P15923 654 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 CCNCP24863 283 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 PTPN3P26045 913 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 OR1E1P30953 314 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 ACTN2P35609 894 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 CHKAP35790 457 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 HSPA9P38646 679 aaKnown RBP6.81□□□□□ -1.32
VPS41-204ENST00000413141 MAGEA6P43360 314 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 PAPOLAP51003 745 aaKnown RBP6.81□□□□□ -1.32
VPS41-204ENST00000413141 CDH4P55283 916 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 RPS24P62847 133 aaKnown RBP6.81□□□□□ -1.32
VPS41-204ENST00000413141 IFI35P80217 286 aaPredicted RBP6.81□□□□□ -1.32
VPS41-204ENST00000413141 ZBTB17Q13105 803 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 KCNJ11Q14654 390 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 CASP8Q14790 479 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 ZNF77Q15935 545 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 LRIT3Q3SXY7 679 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 PARP15Q460N3 678 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 ANKRD20A2Q5SQ80 823 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 RARS2Q5T160 578 aaKnown RBP6.81□□□□□ -1.32
VPS41-204ENST00000413141 FAM182AQ5T1J6 154 aa6.81□□□□□ -1.32
VPS41-204ENST00000413141 FAXCQ5TGI0 409 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms