RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 OXSMQ9NWU1 459 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 BTBD7Q9P203 1132 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 SUCOQ9UBS9 1254 aaKnown RBP5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 GBF1Q92538 1859 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 PLXNB2O15031 1838 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 LACTBL1A8MY62 500 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 UPP2O95045 317 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 CLPTM1O96005 669 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 NFICP08651 508 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 C7P10643 843 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 PHKA2P46019 1235 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 ALDH3B2P48448 385 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 RPL10AP62906 217 aaKnown RBP5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 GALNT1Q10472 559 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 PPIL2Q13356 520 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 PDK1Q15118 436 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 C15orf59Q2T9L4 293 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 RALGPS1Q5JS13 557 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 CFAP157Q5JU67 520 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 ZNF484Q5JVG2 852 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 SH3PXD2AQ5TCZ1 1133 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 MAP1SQ66K74 1059 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 KCTD11Q693B1 232 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 JADE1Q6IE81 842 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 OR6B2Q6IFH4 312 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 ZYG11AQ6WRX3 759 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 SCARA5Q6ZMJ2 495 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 BNC2Q6ZN30 1099 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 ATG14Q6ZNE5 492 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 DENND5BQ6ZUT9 1274 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 ZBTB33Q86T24 672 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 ZNF410Q86VK4 478 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 CRYBG2Q8N1P7 616 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 DIS3LQ8TF46 1054 aaKnown RBP5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 ZNF597Q96LX8 424 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 VAT1Q99536 393 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 ILKAPQ9H0C8 392 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 COG4Q9H9E3 785 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 LRRC4Q9HBW1 653 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 CASS4Q9NQ75 786 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 SNX15Q9NRS6 342 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 TMEM216Q9P0N5 145 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 NXF1Q9UBU9 619 aaKnown RBP5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 HMGXB4Q9UGU5 601 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 ZNHIT2Q9UHR6 403 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 IPO11Q9UI26 975 aaKnown RBP5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 PTBP2Q9UKA9 531 aaKnown RBP5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 INPP5FQ9Y2H2 1132 aa5.87□□□□□ -1.47
CCDC88A-203ENST00000412148 CCDC195A0A1B0GUA6 201 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 TARM1B6A8C7 271 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 ACOT8O14734 319 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 PAPSS1O43252 624 aaPredicted RBP5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 ZBTB14O43829 449 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 CACNG3O60359 315 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 NPHS1O60500 1241 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 ITGB3P05106 788 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 STAG3L1P0CL83 205 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 CXCL8P10145 99 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 PPARGP37231 505 aaPredicted RBP5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 RAP1GAPP47736 663 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 NPY2RP49146 381 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 TKTL1P51854 596 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 NDST1P52848 882 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 NRLP54845 237 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 CDH8P55286 799 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 SCAPQ12770 1279 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 PRKAA1Q13131 559 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 TMEM132DQ14C87 1099 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 TRIP10Q15642 601 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 ZBTB6Q15916 424 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 CA9Q16790 459 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 SLC10A6Q3KNW5 377 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 SEZ6Q53EL9 994 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 CELF3Q5SZQ8 465 aaKnown RBP5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 CHSY3Q70JA7 882 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 CROCCP3Q8IVE0 287 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 CNTN4Q8IWV2 1026 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 RBM12BQ8IXT5 1001 aaKnown RBP5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 TMEM151AQ8N4L1 468 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 PACRGLQ8N7B6 248 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 TMEM102Q8N9M5 508 aaPredicted RBP5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 HM13Q8TCT9 377 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 HEXIM2Q96MH2 286 aaKnown RBP5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 UBE2OQ9C0C9 1292 aaKnown RBP5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 SENP6Q9GZR1 1112 aaPredicted RBP5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 SMARCAD1Q9H4L7 1026 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 ZBTB26Q9HCK0 441 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 TCF7L2Q9NQB0 619 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 TBCCD1Q9NVR7 557 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 PNPOQ9NVS9 261 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 FZD10Q9ULW2 581 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 AP4E1Q9UPM8 1137 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 AFG3L2Q9Y4W6 797 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 HEY1Q9Y5J3 304 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 MCM3APO60318 1980 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 LTBP3Q9NS15 1303 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 PSMD3O43242 534 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 LYPLA1O75608 230 aaPredicted RBP5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 CRTAMO95727 393 aa5.86□□□□□ -1.47
CCDC88A-203ENST00000412148 AP2A1O95782 977 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms