RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 CD86P42081 329 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 AIF1P55008 147 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 BCL2L1Q07817 233 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 NOMO1Q15155 1222 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 TERF2Q15554 542 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 LVRNQ6Q4G3 990 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 SLC26A11Q86WA9 606 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 PLD5Q8N7P1 536 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 PPFIBP2Q8ND30 876 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 ARMC2Q8NEN0 867 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 ING5Q8WYH8 240 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 HIST1H2AHQ96KK5 128 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 HIST1H2AJQ99878 128 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 H2AFJQ9BTM1 129 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 CRTAC1Q9NQ79 661 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 YIPF1Q9Y548 306 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 MYH9P35579 1960 aaKnown RBP9.29□□□□□ -0.92
LIG4-202ENST00000405925 GOLGA8QA0A0J9YX86 632 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 GOLGA8OA6NCC3 632 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 GOLGA8NF8WBI6 632 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 BUD23O43709 281 aaKnown RBP9.29□□□□□ -0.92
LIG4-202ENST00000405925 CCDC142Q17RM4 750 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 ZNF284Q2VY69 593 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 PPP2R2DQ66LE6 453 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 HFE2Q6ZVN8 426 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 PSTKQ8IV42 348 aaKnown RBP9.29□□□□□ -0.92
LIG4-202ENST00000405925 SLC35F5Q8WV83 523 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 TMEM175Q9BSA9 504 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 VRTNQ9H8Y1 702 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 ARHGEF4Q9NR80 690 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 GRID1Q9ULK0 1009 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 NR2E1Q9Y466 385 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 CPQQ9Y646 472 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 LAMB1P07942 1786 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 MYH7BA7E2Y1 1941 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 TIMM44O43615 452 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 SRP72O76094 671 aaKnown RBP9.29□□□□□ -0.92
LIG4-202ENST00000405925 MYBL2P10244 700 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 RFC2P35250 354 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 ARFIP2P53365 341 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 STARD3Q14849 445 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 TRADDQ15628 312 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 UPP1Q16831 310 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 KIF19Q2TAC6 998 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 TMC5Q6UXY8 1006 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 GET4Q7L5D6 327 aaPredicted RBP9.29□□□□□ -0.92
LIG4-202ENST00000405925 NLRP14Q86W24 1093 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 ZCCHC9Q8N567 271 aaKnown RBP9.29□□□□□ -0.92
LIG4-202ENST00000405925 NAT16Q8N8M0 369 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 GRIN3AQ8TCU5 1115 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 CSGALNACT1Q8TDX6 532 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 FAM111AQ96PZ2 611 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 GPR62Q9BZJ7 368 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 VPS9D1Q9Y2B5 631 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 EFR3BQ9Y2G0 817 aa9.29□□□□□ -0.92
LIG4-202ENST00000405925 TBC1D4O60343 1298 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 STAU1O95793 577 aaKnown RBP9.28□□□□□ -0.92
LIG4-202ENST00000405925 C1RP00736 705 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 ESRRAP11474 423 aaPredicted RBP9.28□□□□□ -0.92
LIG4-202ENST00000405925 GLRBP48167 497 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 HADHBP55084 474 aaKnown RBP9.28□□□□□ -0.92
LIG4-202ENST00000405925 STX3Q13277 289 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 RBBP5Q15291 538 aaKnown RBP9.28□□□□□ -0.92
LIG4-202ENST00000405925 FNDC3BQ53EP0 1204 aaKnown RBP9.28□□□□□ -0.92
LIG4-202ENST00000405925 ARMC12Q5T9G4 340 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 ACAD11Q709F0 780 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 TMCO2Q7Z6W1 182 aaPredicted RBP9.28□□□□□ -0.92
LIG4-202ENST00000405925 DNAJB7Q7Z6W7 309 aaPredicted RBP9.28□□□□□ -0.92
LIG4-202ENST00000405925 RASGEF1CQ8N431 466 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 PPP1R10Q96QC0 940 aaKnown RBP9.28□□□□□ -0.92
LIG4-202ENST00000405925 SMOQ99835 787 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 TBL1YQ9BQ87 522 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 TRMT6Q9UJA5 497 aaKnown RBP9.28□□□□□ -0.92
LIG4-202ENST00000405925 PHF24Q9UPV7 400 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 C9IYK1 514 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 GLP2RO95838 553 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 PFKMP08237 780 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 PIRTP0C851 137 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 MAP4P27816 1152 aaKnown RBP9.28□□□□□ -0.92
LIG4-202ENST00000405925 CST5P28325 142 aaPredicted RBP9.28□□□□□ -0.92
LIG4-202ENST00000405925 GPR15P49685 360 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 CDK16Q00536 496 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 GPM6BQ13491 265 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 CA9Q16790 459 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 IMPG1Q17R60 797 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 AARS2Q5JTZ9 985 aaKnown RBP9.28□□□□□ -0.92
LIG4-202ENST00000405925 ZNF470Q6ECI4 717 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 TXNRD3NBQ6F5E7 133 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 TSEN2Q8NCE0 465 aaKnown RBP9.28□□□□□ -0.92
LIG4-202ENST00000405925 DDX1Q92499 740 aaKnown RBP9.28□□□□□ -0.92
LIG4-202ENST00000405925 USP6NLQ92738 828 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 BADQ92934 168 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 CLPBQ9H078 707 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 STK39Q9UEW8 545 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 KIAA1551Q9HCM1 1747 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 ERI2A8K979 691 aaKnown RBP9.28□□□□□ -0.92
LIG4-202ENST00000405925 ANKRD65E5RJM6 399 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 FGF18O76093 207 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 FAM163BP0C2L3 166 aa9.28□□□□□ -0.92
LIG4-202ENST00000405925 TCF4P15884 667 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms