RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 DPH5Q9H2P9 285 aa6.75□□□□□ -1.33
TM9SF4-202ENST00000398022 INTS9Q9NV88 658 aaKnown RBP6.75□□□□□ -1.33
TM9SF4-202ENST00000398022 GID8Q9NWU2 228 aa6.75□□□□□ -1.33
TM9SF4-202ENST00000398022 GJD2Q9UKL4 321 aa6.75□□□□□ -1.33
TM9SF4-202ENST00000398022 RUVBL1Q9Y265 456 aaKnown RBP6.75□□□□□ -1.33
TM9SF4-202ENST00000398022 A0A0A6YYK5 440 aaPredicted RBP6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 NKRFO15226 690 aaKnown RBP eCLIP6.74□□□□□ -1.335e-6■■■□□ 16.1
TM9SF4-202ENST00000398022 SHOXO15266 292 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 FZD6O60353 706 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 GPC4O75487 556 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 HLA-FP30511 346 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 GARSP41250 739 aaKnown RBP6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 SEC24CP53992 1094 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 ERVK-9P63128 1117 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 ADAM15Q13444 863 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 TM4SF20Q53R12 229 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 ZNF425Q6IV72 752 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 LZTR1Q8N653 840 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 SCFD2Q8WU76 684 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 DACH2Q96NX9 599 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 VPS35Q96QK1 796 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 CDHR5Q9HBB8 845 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 SARS2Q9NP81 518 aaKnown RBP6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 TRMT13Q9NUP7 481 aaKnown RBP6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 KLHL9Q9P2J3 617 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 CTNNAL1Q9UBT7 734 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 VPS28Q9UK41 221 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 ZSWIM8A7E2V4 1837 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 CAPN8A6NHC0 703 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 FOXO6A8MYZ6 492 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 FSCN2O14926 492 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 TTLL1O95922 423 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 SNRNP70P08621 437 aaKnown RBP6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 CPA3P15088 417 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 PTBP1P26599 531 aaKnown RBP eCLIP6.74□□□□□ -1.331e-6■■□□□ 13
TM9SF4-202ENST00000398022 ADARP55265 1226 aaKnown RBP6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 NPEPPSP55786 919 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 DHX9Q08211 1270 aaKnown RBP6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 GRAPQ13588 217 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 HABP2Q14520 560 aaPredicted RBP6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 MAPK6Q16659 721 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 ARHGAP44Q17R89 818 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 C6orf163Q5TEZ5 329 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 KCNK18Q7Z418 384 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 LRRC6Q86X45 466 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 TBC1D19Q8N5T2 526 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 STKLD1Q8NE28 680 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 GMCL1P1Q8NEA9 526 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 GRAPLQ8TC17 118 aaPredicted RBP6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 TBCDQ9BTW9 1192 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 DDX47Q9H0S4 455 aaKnown RBP6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 GANQ9H2C0 597 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 FAIMQ9NVQ4 179 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 NSMCE4AQ9NXX6 385 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 MTMR4Q9NYA4 1195 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 COQ3Q9NZJ6 369 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 NAGPAQ9UK23 515 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 TMEM59LQ9UK28 342 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 AP3M1Q9Y2T2 418 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 PDXKO00764 312 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 ZBED1O96006 694 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 PSMA2P25787 234 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 ACTR1AP61163 376 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 NKX3-2P78367 333 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 PON2Q15165 354 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 UBE2SQ16763 222 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 KNOP1Q1ED39 458 aaKnown RBP6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 PARP6Q2NL67 630 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 ZACNQ401N2 412 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 CXorf57Q6NSI4 855 aaKnown RBP6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 TICAM1Q8IUC6 712 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 CCDC36Q8IYA8 594 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 CNTD1Q8N815 330 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 TTLL6Q8N841 843 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 TPCN2Q8NHX9 752 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 U2AF1L4Q8WU68 220 aaKnown RBP6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 SCFD1Q8WVM8 642 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 NCSTNQ92542 709 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 FMO2Q99518 471 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 PKP4Q99569 1192 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 TXN2Q99757 166 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 SLC29A1Q99808 456 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 ABCG8Q9H221 673 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 TRIM45Q9H8W5 580 aaPredicted RBP6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 PALMDQ9NP74 551 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 MAN1C1Q9NR34 630 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 GDAP2Q9NXN4 497 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 DTLQ9NZJ0 730 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 ACTR3BQ9P1U1 418 aa6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 FAF1Q9UNN5 650 aaPredicted RBP6.74□□□□□ -1.33
TM9SF4-202ENST00000398022 PCDH17O14917 1159 aa6.73□□□□□ -1.33
TM9SF4-202ENST00000398022 NPC1O15118 1278 aa6.73□□□□□ -1.33
TM9SF4-202ENST00000398022 SLC16A3O15427 465 aaKnown RBP6.73□□□□□ -1.33
TM9SF4-202ENST00000398022 CRTAMO95727 393 aa6.73□□□□□ -1.33
TM9SF4-202ENST00000398022 MYBP10242 640 aa6.73□□□□□ -1.33
TM9SF4-202ENST00000398022 EDN3P14138 238 aa6.73□□□□□ -1.33
TM9SF4-202ENST00000398022 PRKCIP41743 596 aa6.73□□□□□ -1.33
TM9SF4-202ENST00000398022 RNF144AP50876 292 aaPredicted RBP6.73□□□□□ -1.33
TM9SF4-202ENST00000398022 SLC12A3P55017 1021 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms