RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 LIMK2P53671 638 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 FOLH1Q04609 750 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 IFRD2Q12894 506 aaPredicted RBP12.99□□□□□ -0.33
SHMT1-205ENST00000395684 ITGA7Q13683 1181 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 KCTD2Q14681 263 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 GRAMD1BQ3KR37 738 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 SLC25A52Q3SY17 297 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 CLEC14AQ86T13 490 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 TDRD5Q8NAT2 981 aaKnown RBP12.99□□□□□ -0.33
SHMT1-205ENST00000395684 SLC2A14Q8TDB8 520 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 ZNF669Q96BR6 464 aaPredicted RBP12.99□□□□□ -0.33
SHMT1-205ENST00000395684 GCNAQ96QF7 691 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 WDR55Q9H6Y2 383 aaPredicted RBP12.99□□□□□ -0.33
SHMT1-205ENST00000395684 IGSF9Q9P2J2 1179 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 RCOR3Q9P2K3 495 aaPredicted RBP12.99□□□□□ -0.33
SHMT1-205ENST00000395684 TXNDC9O14530 226 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 AIM2O14862 343 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 PEX1O43933 1283 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 SLC25A27O95847 323 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 CHRNGP07510 517 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 SERPINB8P50452 374 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 PDK1Q15118 436 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 ANKRD20A4Q4UJ75 823 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 HSP90AA5PQ58FG0 334 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 DCAF6Q58WW2 860 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 PPM1LQ5SGD2 360 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 OGFRL1Q5TC84 451 aaPredicted RBP12.98□□□□□ -0.33
SHMT1-205ENST00000395684 MAP3K21Q5TCX8 1036 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 METTL21CQ5VZV1 264 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 TMEM135Q86UB9 458 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 FAM149B1Q96BN6 582 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 MFSD3Q96ES6 412 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 PPP1R36Q96LQ0 422 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 HAPLN3Q96S86 360 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 KCNK16Q96T55 309 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 GATA5Q9BWX5 397 aaPredicted RBP12.98□□□□□ -0.33
SHMT1-205ENST00000395684 TCF7L2Q9NQB0 619 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 MAGED2Q9UNF1 606 aaPredicted RBP12.98□□□□□ -0.33
SHMT1-205ENST00000395684 CITO14578 2027 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 TRIM13O60858 407 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 FBXO21O94952 628 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 C2P06681 752 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 ACAT1P24752 427 aaKnown RBP12.98□□□□□ -0.33
SHMT1-205ENST00000395684 HOXA11P31270 313 aaPredicted RBP12.98□□□□□ -0.33
SHMT1-205ENST00000395684 CCR10P46092 362 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 ALDH1A3P47895 512 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 SATL1Q86VE3 508 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 CRYBG2Q8N1P7 616 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.98□□□□□ -0.33
SHMT1-205ENST00000395684 ICA1LQ8NDH6 482 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 EIF2AQ9BY44 585 aaKnown RBP12.98□□□□□ -0.33
SHMT1-205ENST00000395684 LRRC40Q9H9A6 602 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 ADAM28Q9UKQ2 775 aa12.98□□□□□ -0.33
SHMT1-205ENST00000395684 KLHL33A6NCF5 533 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 OR6B1O95007 311 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 TKTP29401 623 aaKnown RBP12.97□□□□□ -0.33
SHMT1-205ENST00000395684 GNL1P36915 607 aaPredicted RBP12.97□□□□□ -0.33
SHMT1-205ENST00000395684 BAG6P46379 1132 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 NUDT2P50583 147 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 CHN2P52757 468 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 PGGT1BP53609 377 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 SNAPC2Q13487 334 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 TLR1Q15399 786 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 C9orf57Q5W0N0 161 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 TMC7Q7Z402 723 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 LRRC52Q8N7C0 313 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 URGCPQ8TCY9 931 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 SNX27Q96L92 541 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 BTBD9Q96Q07 612 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 NMRAL1Q9HBL8 299 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 STK39Q9UEW8 545 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 VANGL2Q9ULK5 521 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 G3BP2Q9UN86 482 aaKnown RBP12.97□□□□□ -0.33
SHMT1-205ENST00000395684 PPP2R3BQ9Y5P8 575 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 TMEM114B3SHH9 223 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 FAM72CH0Y354 149 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 MATN2O00339 956 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 SPTLC1O15269 473 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 MPSTP25325 297 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 PTPN3P26045 913 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 PIK3R1P27986 724 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 MSX2P35548 267 aaPredicted RBP12.97□□□□□ -0.33
SHMT1-205ENST00000395684 PAFAH1B3Q15102 231 aaKnown RBP12.97□□□□□ -0.33
SHMT1-205ENST00000395684 FAM72AQ5TYM5 149 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 FAM72DQ6L9T8 149 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 FAM72BQ86X60 149 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 PSTKQ8IV42 348 aaKnown RBP12.97□□□□□ -0.33
SHMT1-205ENST00000395684 PQLC1Q8N2U9 271 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 OTUD5Q96G74 571 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 HSFY1Q96LI6 401 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 PLEKHA5Q9HAU0 1116 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 KLHL8Q9P2G9 620 aaPredicted RBP12.97□□□□□ -0.33
SHMT1-205ENST00000395684 PCDHGB4Q9UN71 923 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 PSMD13Q9UNM6 376 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 GINS2Q9Y248 185 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 DTNAQ9Y4J8 743 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 PCDHGB5Q9Y5G0 923 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 SLC4A7Q9Y6M7 1214 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 PAPPA2Q9BXP8 1791 aa12.97□□□□□ -0.33
SHMT1-205ENST00000395684 A0A0G2JLL6 359 aaPredicted RBP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms