RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TBC1D31Q96DN5 1066 aa22.32■■□□□ 1.16
CLN3-207ENST00000395653 FEM1AQ9BSK4 669 aa22.32■■□□□ 1.16
CLN3-207ENST00000395653 PACSIN1Q9BY11 444 aa22.32■■□□□ 1.16
CLN3-207ENST00000395653 MAGEB5Q9BZ81 275 aa22.32■■□□□ 1.16
CLN3-207ENST00000395653 SPTLC3Q9NUV7 552 aa22.32■■□□□ 1.16
CLN3-207ENST00000395653 IP6K2Q9UHH9 426 aa22.32■■□□□ 1.16
CLN3-207ENST00000395653 ANAPC7Q9UJX3 599 aa22.32■■□□□ 1.16
CLN3-207ENST00000395653 NEU3Q9UQ49 428 aa22.32■■□□□ 1.16
CLN3-207ENST00000395653 OR51B4Q9Y5P0 310 aa22.32■■□□□ 1.16
CLN3-207ENST00000395653 EIF3CLB5ME19 914 aaKnown RBP22.31■■□□□ 1.16
CLN3-207ENST00000395653 ZBTB24O43167 697 aaPredicted RBP22.31■■□□□ 1.16
CLN3-207ENST00000395653 HRO43593 1189 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 SYNCRIPO60506 623 aaKnown RBP22.31■■□□□ 1.16
CLN3-207ENST00000395653 EPHX1P07099 455 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 TMEM253P0C7T8 217 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 MIPP30301 263 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 CDC25BP30305 580 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 OR1E1P30953 314 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 PCK1P35558 622 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 ST8SIA6P61647 398 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 ECT2LQ008S8 904 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 NIPA2Q8N8Q9 360 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 HMGB4Q8WW32 186 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 GAB3Q8WWW8 586 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 MYO19Q96H55 970 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 MRGPRX3Q96LB0 322 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 PANX2Q96RD6 677 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 EIF3CQ99613 913 aaKnown RBP22.31■■□□□ 1.16
CLN3-207ENST00000395653 MUC3BQ9H195 1237 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 BCCIPQ9P287 314 aaKnown RBP eCLIP22.31■■□□□ 1.16
CLN3-207ENST00000395653 UVRAGQ9P2Y5 699 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 ERVW-1Q9UQF0 538 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 DOCK4Q8N1I0 1966 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 PRPSAP2O60256 369 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 RHOQP17081 205 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 GABRG2P18507 467 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 SEMA3BQ13214 749 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 ERMARDQ5T6L9 678 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 RNF219Q5W0B1 726 aaPredicted RBP22.31■■□□□ 1.16
CLN3-207ENST00000395653 RWDD4Q6NW29 188 aaKnown RBP22.31■■□□□ 1.16
CLN3-207ENST00000395653 ZNF783Q6ZMS7 281 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 PYROXD2Q8N2H3 581 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 ZNF564Q8TBZ8 553 aaPredicted RBP22.31■■□□□ 1.16
CLN3-207ENST00000395653 EPAS1Q99814 870 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 TPSD1Q9BZJ3 242 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 TMEM248Q9NWD8 314 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 CTTNBP2NLQ9P2B4 639 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 VPS28Q9UK41 221 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 AP4E1Q9UPM8 1137 aa22.31■■□□□ 1.16
CLN3-207ENST00000395653 ILVBLA1L0T0 632 aa22.3■■□□□ 1.16
CLN3-207ENST00000395653 MYO1FO00160 1098 aa22.3■■□□□ 1.16
CLN3-207ENST00000395653 RPP40O75818 363 aaKnown RBP22.3■■□□□ 1.16
CLN3-207ENST00000395653 LMNAP02545 664 aaKnown RBP22.3■■□□□ 1.16
CLN3-207ENST00000395653 HLA-EP13747 358 aa22.3■■□□□ 1.16
CLN3-207ENST00000395653 HTR7P34969 479 aa22.3■■□□□ 1.16
CLN3-207ENST00000395653 CTSOP43234 321 aaPredicted RBP22.3■■□□□ 1.16
CLN3-207ENST00000395653 MAPKAPK2P49137 400 aa22.3■■□□□ 1.16
CLN3-207ENST00000395653 SRSF5Q13243 272 aaKnown RBP22.3■■□□□ 1.16
CLN3-207ENST00000395653 USP39Q53GS9 565 aaKnown RBP22.3■■□□□ 1.16
CLN3-207ENST00000395653 NLRP14Q86W24 1093 aa22.3■■□□□ 1.16
CLN3-207ENST00000395653 PSTKQ8IV42 348 aaKnown RBP22.3■■□□□ 1.16
CLN3-207ENST00000395653 PEBP4Q96S96 227 aa22.3■■□□□ 1.16
CLN3-207ENST00000395653 SUN2Q9UH99 717 aa22.3■■□□□ 1.16
CLN3-207ENST00000395653 PCSK1NQ9UHG2 260 aa22.3■■□□□ 1.16
CLN3-207ENST00000395653 USP18Q9UMW8 372 aa22.3■■□□□ 1.16
CLN3-207ENST00000395653 CKAP5Q14008 2032 aa22.29■■□□□ 1.16
CLN3-207ENST00000395653 NDUFV2P19404 249 aa22.29■■□□□ 1.16
CLN3-207ENST00000395653 FECHP22830 423 aa22.29■■□□□ 1.16
CLN3-207ENST00000395653 VASPP50552 380 aaPredicted RBP22.29■■□□□ 1.16
CLN3-207ENST00000395653 CAMK2GQ13555 558 aaPredicted RBP22.29■■□□□ 1.16
CLN3-207ENST00000395653 SIM2Q14190 667 aaPredicted RBP22.29■■□□□ 1.16
CLN3-207ENST00000395653 CYP4V2Q6ZWL3 525 aaPredicted RBP22.29■■□□□ 1.16
CLN3-207ENST00000395653 CCDC170Q8IYT3 715 aa22.29■■□□□ 1.16
CLN3-207ENST00000395653 PGBD3Q8N328 593 aa22.29■■□□□ 1.16
CLN3-207ENST00000395653 SUMF1Q8NBK3 374 aa22.29■■□□□ 1.16
CLN3-207ENST00000395653 SNRNP25Q9BV90 132 aaKnown RBP22.29■■□□□ 1.16
CLN3-207ENST00000395653 C2orf49Q9BVC5 232 aaPredicted RBP22.29■■□□□ 1.16
CLN3-207ENST00000395653 LCMT1Q9UIC8 334 aa22.29■■□□□ 1.16
CLN3-207ENST00000395653 PRR23AA6NEV1 266 aa22.28■■□□□ 1.16
CLN3-207ENST00000395653 NNMTP40261 264 aa22.28■■□□□ 1.16
CLN3-207ENST00000395653 KRT83P78385 493 aa22.28■■□□□ 1.16
CLN3-207ENST00000395653 HNRNPA1L2Q32P51 320 aaKnown RBP22.28■■□□□ 1.16
CLN3-207ENST00000395653 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.28■■□□□ 1.16
CLN3-207ENST00000395653 ZNF366Q8N895 744 aa22.28■■□□□ 1.16
CLN3-207ENST00000395653 DCAF4L2Q8NA75 395 aa22.28■■□□□ 1.16
CLN3-207ENST00000395653 BTBD6Q96KE9 485 aa22.28■■□□□ 1.16
CLN3-207ENST00000395653 MRGPRX1Q96LB2 322 aa22.28■■□□□ 1.16
CLN3-207ENST00000395653 FBRSQ9HAH7 460 aa22.28■■□□□ 1.16
CLN3-207ENST00000395653 GPATCH2LQ9NWQ4 482 aa22.28■■□□□ 1.16
CLN3-207ENST00000395653 IMPACTQ9P2X3 320 aa22.28■■□□□ 1.16
CLN3-207ENST00000395653 SLC25A13Q9UJS0 675 aa22.28■■□□□ 1.16
CLN3-207ENST00000395653 INTUQ9ULD6 942 aa22.28■■□□□ 1.16
CLN3-207ENST00000395653 SMG5Q9UPR3 1016 aaKnown RBP22.28■■□□□ 1.16
CLN3-207ENST00000395653 EML5Q05BV3 1969 aa22.27■■□□□ 1.16
CLN3-207ENST00000395653 A0A0D9SEW6 157 aa22.27■■□□□ 1.16
CLN3-207ENST00000395653 CREB3O43889 395 aa22.27■■□□□ 1.16
CLN3-207ENST00000395653 LCA5LO95447 670 aa22.27■■□□□ 1.16
CLN3-207ENST00000395653 C7P10643 843 aa22.27■■□□□ 1.16
CLN3-207ENST00000395653 EPHB2P29323 1055 aa22.27■■□□□ 1.16
CLN3-207ENST00000395653 ETFBP38117 255 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms