RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 Q96MT0 163 aa12.69□□□□□ -0.38
VPS13A-204ENST00000376634 DLC1Q96QB1 1528 aa12.69□□□□□ -0.38
VPS13A-204ENST00000376634 LOXHD1Q8IVV2 1947 aa12.69□□□□□ -0.38
VPS13A-204ENST00000376634 UBE2QL1A1L167 161 aa12.69□□□□□ -0.38
VPS13A-204ENST00000376634 PGAM1P18669 254 aa12.69□□□□□ -0.38
VPS13A-204ENST00000376634 FNDC3BQ53EP0 1204 aaKnown RBP12.69□□□□□ -0.38
VPS13A-204ENST00000376634 FAM20CQ8IXL6 584 aa12.69□□□□□ -0.38
VPS13A-204ENST00000376634 PREX1Q8TCU6 1659 aa12.69□□□□□ -0.38
VPS13A-204ENST00000376634 A0A087X1B8 175 aa12.69□□□□□ -0.38
VPS13A-204ENST00000376634 PTPN4P29074 926 aa12.69□□□□□ -0.38
VPS13A-204ENST00000376634 SRP54P61011 504 aaKnown RBP12.69□□□□□ -0.38
VPS13A-204ENST00000376634 SLC38A2Q96QD8 506 aa12.69□□□□□ -0.38
VPS13A-204ENST00000376634 TBL1YQ9BQ87 522 aa12.69□□□□□ -0.38
VPS13A-204ENST00000376634 ZNF70Q9UC06 446 aaPredicted RBP12.69□□□□□ -0.38
VPS13A-204ENST00000376634 TNFRSF21O75509 655 aa12.69□□□□□ -0.38
VPS13A-204ENST00000376634 LRPAP1P30533 357 aa12.69□□□□□ -0.38
VPS13A-204ENST00000376634 CLEC10AQ8IUN9 316 aa12.69□□□□□ -0.38
VPS13A-204ENST00000376634 TBC1D16Q8TBP0 767 aa12.69□□□□□ -0.38
VPS13A-204ENST00000376634 PRKD2Q9BZL6 878 aa12.69□□□□□ -0.38
VPS13A-204ENST00000376634 TMCO1Q9UM00 188 aa12.69□□□□□ -0.38
VPS13A-204ENST00000376634 LRCH1Q9Y2L9 728 aa12.69□□□□□ -0.38
VPS13A-204ENST00000376634 MAGI3Q5TCQ9 1506 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 SLC25A12O75746 678 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 RAG1P15918 1043 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 NEK3P51956 506 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 CACNA2D1P54289 1103 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 OLFML2AQ68BL7 652 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 CRAMP1Q96RY5 1269 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 MAP3K14Q99558 947 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 SHOC2Q9UQ13 582 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 MROH7Q68CQ1 1323 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 GRIN3BO60391 1043 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 CDC40O60508 579 aaKnown RBP eCLIP12.68□□□□□ -0.383e-6■■■■□ 23
VPS13A-204ENST00000376634 ATP5BP06576 529 aaKnown RBP12.68□□□□□ -0.38
VPS13A-204ENST00000376634 INO80DQ53TQ3 878 aaPredicted RBP12.68□□□□□ -0.38
VPS13A-204ENST00000376634 NEK5Q6P3R8 708 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 BRSK2Q8IWQ3 736 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 PCSK9Q8NBP7 692 aaKnown RBP12.68□□□□□ -0.38
VPS13A-204ENST00000376634 TSPAN14Q8NG11 270 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 ACTRT2Q8TDY3 377 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 A0A0G2JLW4 131 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 NUMBP49757 651 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 CAMK1DQ8IU85 385 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 CGRRF1Q99675 332 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 RSPH9Q9H1X1 276 aaPredicted RBP12.68□□□□□ -0.38
VPS13A-204ENST00000376634 TBX4P57082 545 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 USP45Q70EL2 814 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 TFAP2DQ7Z6R9 452 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 STK40Q8N2I9 435 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 REXO5Q96IC2 774 aaKnown RBP12.68□□□□□ -0.38
VPS13A-204ENST00000376634 DCUN1D5Q9BTE7 237 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 NCKAP1Q9Y2A7 1128 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 ATP9AO75110 1047 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 RPS12P25398 132 aaKnown RBP12.68□□□□□ -0.38
VPS13A-204ENST00000376634 FOXO4P98177 505 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 MFSD7Q6UXD7 560 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 TC2NQ8N9U0 490 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 UBE2E3Q969T4 207 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 NUAK2Q9H093 628 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 DDX18Q9NVP1 670 aaKnown RBP12.68□□□□□ -0.38
VPS13A-204ENST00000376634 MCM8Q9UJA3 840 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 ESPL1Q14674 2120 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 FAM205CA6NFA0 338 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 XYLBO75191 536 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 CLK3P49761 638 aaKnown RBP12.68□□□□□ -0.38
VPS13A-204ENST00000376634 CDH17Q12864 832 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 MTAPQ13126 283 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 MARC1Q5VT66 337 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 PAIP1Q9H074 479 aaKnown RBP12.68□□□□□ -0.38
VPS13A-204ENST00000376634 WDR27A2RRH5 827 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 IGSF6O95976 241 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 JCHAINP01591 159 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 VTNP04004 478 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 MARSP56192 900 aaKnown RBP12.68□□□□□ -0.38
VPS13A-204ENST00000376634 XRCC4Q13426 336 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 IL27RAQ6UWB1 636 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 PPP1R16AQ96I34 528 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 FAM129BQ96TA1 746 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 FKBP14Q9NWM8 211 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 NYAP2Q9P242 653 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 RPS6KA6Q9UK32 745 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 CLOCKO15516 846 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 KPNA6O60684 536 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 GZMAP12544 262 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 ZNF7P17097 686 aaPredicted RBP12.68□□□□□ -0.38
VPS13A-204ENST00000376634 SMCO1Q147U7 214 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 NAIF1Q69YI7 327 aaPredicted RBP12.68□□□□□ -0.38
VPS13A-204ENST00000376634 TBCDQ9BTW9 1192 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 PLA2G12BQ9BX93 195 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 CHKBQ9Y259 395 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 INVSQ9Y283 1065 aa12.68□□□□□ -0.38
VPS13A-204ENST00000376634 RBAK-RBAKDNI3L0D1 243 aa12.67□□□□□ -0.38
VPS13A-204ENST00000376634 TLX1P31314 330 aaPredicted RBP12.67□□□□□ -0.38
VPS13A-204ENST00000376634 ADARP55265 1226 aaKnown RBP12.67□□□□□ -0.38
VPS13A-204ENST00000376634 ENGASEQ8NFI3 743 aa12.67□□□□□ -0.38
VPS13A-204ENST00000376634 RERGQ96A58 199 aaPredicted RBP12.67□□□□□ -0.38
VPS13A-204ENST00000376634 CLN6Q9NWW5 311 aa12.67□□□□□ -0.38
VPS13A-204ENST00000376634 ZBTB22O15209 634 aa12.67□□□□□ -0.38
VPS13A-204ENST00000376634 CBFBQ13951 182 aa12.67□□□□□ -0.38
VPS13A-204ENST00000376634 FAM187BQ17R55 369 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms