RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 MYOCOSA0A1B0GUC4 107 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 NFKBIEO00221 500 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 TRIM13O60858 407 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 H2AFYO75367 372 aaKnown RBP21.61■■□□□ 1.05
UPF3A-202ENST00000375299 MBTD1Q05BQ5 628 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 C6orf52Q5T4I8 152 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 PPP1R26Q5T8A7 1209 aaPredicted RBP21.61■■□□□ 1.05
UPF3A-202ENST00000375299 TMEM110Q86TL2 294 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 SETD3Q86TU7 594 aaPredicted RBP21.61■■□□□ 1.05
UPF3A-202ENST00000375299 BHLHE22Q8NFJ8 381 aaPredicted RBP21.61■■□□□ 1.05
UPF3A-202ENST00000375299 IRGQQ8WZA9 623 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 CHCHD3Q9NX63 227 aaKnown RBP21.61■■□□□ 1.05
UPF3A-202ENST00000375299 GTF2IRD1Q9UHL9 959 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 PADI4Q9UM07 663 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 RPS6KL1Q9Y6S9 549 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 PRSS51A0A1B0GVH4 220 aa21.6■■□□□ 1.05
UPF3A-202ENST00000375299 CAPNS1P04632 268 aa21.6■■□□□ 1.05
UPF3A-202ENST00000375299 SPRP35270 261 aaPredicted RBP21.6■■□□□ 1.05
UPF3A-202ENST00000375299 PTPN9P43378 593 aa21.6■■□□□ 1.05
UPF3A-202ENST00000375299 CDKL1Q00532 357 aa21.6■■□□□ 1.05
UPF3A-202ENST00000375299 CYLC2Q14093 348 aaPredicted RBP21.6■■□□□ 1.05
UPF3A-202ENST00000375299 PKDCCQ504Y2 493 aa21.6■■□□□ 1.05
UPF3A-202ENST00000375299 EXOC8Q8IYI6 725 aa21.6■■□□□ 1.05
UPF3A-202ENST00000375299 PGAM4Q8N0Y7 254 aa21.6■■□□□ 1.05
UPF3A-202ENST00000375299 RCN3Q96D15 328 aa21.6■■□□□ 1.05
UPF3A-202ENST00000375299 LGMNQ99538 433 aa21.6■■□□□ 1.05
UPF3A-202ENST00000375299 PKP2Q99959 881 aa21.6■■□□□ 1.05
UPF3A-202ENST00000375299 WDR55Q9H6Y2 383 aaPredicted RBP21.6■■□□□ 1.05
UPF3A-202ENST00000375299 MINDY3Q9H8M7 445 aa21.6■■□□□ 1.05
UPF3A-202ENST00000375299 DNAAF2Q9NVR5 837 aaKnown RBP21.6■■□□□ 1.05
UPF3A-202ENST00000375299 GGA3Q9NZ52 723 aa21.6■■□□□ 1.05
UPF3A-202ENST00000375299 NEMP1O14524 444 aa21.6■■□□□ 1.05
UPF3A-202ENST00000375299 LIMK2P53671 638 aa21.6■■□□□ 1.05
UPF3A-202ENST00000375299 CEACAM7Q14002 265 aa21.6■■□□□ 1.05
UPF3A-202ENST00000375299 DALRD3Q5D0E6 543 aaKnown RBP21.6■■□□□ 1.05
UPF3A-202ENST00000375299 TTC39CQ8N584 583 aa21.6■■□□□ 1.05
UPF3A-202ENST00000375299 ATXN7L3BQ96GX2 97 aa21.6■■□□□ 1.05
UPF3A-202ENST00000375299 CATSPER2Q96P56 530 aa21.6■■□□□ 1.05
UPF3A-202ENST00000375299 GATA5Q9BWX5 397 aaPredicted RBP21.6■■□□□ 1.05
UPF3A-202ENST00000375299 MRPL1Q9BYD6 325 aaKnown RBP21.6■■□□□ 1.05
UPF3A-202ENST00000375299 B3GNT5Q9BYG0 378 aa21.6■■□□□ 1.05
UPF3A-202ENST00000375299 ILKAPQ9H0C8 392 aaPredicted RBP21.6■■□□□ 1.05
UPF3A-202ENST00000375299 HOXC10Q9NYD6 342 aa21.6■■□□□ 1.05
UPF3A-202ENST00000375299 RNF103O00237 685 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 MATN2O00339 956 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 SLC22A2O15244 555 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 MPOP05164 745 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 CCDC166P0CW27 439 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 SETSIPP0DME0 302 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 CDK4P11802 303 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 MPSTP25325 297 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 PSMB4P28070 264 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 NR1H2P55055 460 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 MS4A2Q01362 244 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 LSM12Q3MHD2 195 aaKnown RBP21.59■■□□□ 1.05
UPF3A-202ENST00000375299 METTL7BQ6UX53 244 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 CLEC14AQ86T13 490 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 TRIM50Q86XT4 487 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 C11orf84Q9BUA3 381 aaPredicted RBP21.59■■□□□ 1.05
UPF3A-202ENST00000375299 SLC2A11Q9BYW1 496 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 PDZD7Q9H5P4 517 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 ASB7Q9H672 318 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 THEGQ9P2T0 379 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 PPP1R1BQ9UD71 204 aaPredicted RBP21.59■■□□□ 1.05
UPF3A-202ENST00000375299 GJA3Q9Y6H8 435 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 A0A096LPK6 155 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 PALM2-AKAP2B1ALY0 433 aaPredicted RBP21.59■■□□□ 1.05
UPF3A-202ENST00000375299 ME2P23368 584 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 MSX2P35548 267 aaPredicted RBP21.59■■□□□ 1.05
UPF3A-202ENST00000375299 PKNOX1P55347 436 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 IRF9Q00978 393 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 ADRM1Q16186 407 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 STRA8Q7Z7C7 330 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 ZNF410Q86VK4 478 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 CPSF7Q8N684 471 aaKnown RBP21.59■■□□□ 1.05
UPF3A-202ENST00000375299 CCDC185Q8N715 623 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 CENPIQ92674 756 aaPredicted RBP21.59■■□□□ 1.05
UPF3A-202ENST00000375299 FCRL3Q96P31 734 aaPredicted RBP21.59■■□□□ 1.05
UPF3A-202ENST00000375299 FAM124BQ9H5Z6 455 aaPredicted RBP21.59■■□□□ 1.05
UPF3A-202ENST00000375299 G3BP2Q9UN86 482 aaKnown RBP21.59■■□□□ 1.05
UPF3A-202ENST00000375299 USP3Q9Y6I4 520 aa21.59■■□□□ 1.05
UPF3A-202ENST00000375299 HDAC3O15379 428 aa21.58■■□□□ 1.05
UPF3A-202ENST00000375299 CFLARO15519 480 aa21.58■■□□□ 1.05
UPF3A-202ENST00000375299 PFDN1O60925 122 aa21.58■■□□□ 1.05
UPF3A-202ENST00000375299 GABBR2O75899 941 aa21.58■■□□□ 1.05
UPF3A-202ENST00000375299 LTFP02788 710 aa21.58■■□□□ 1.05
UPF3A-202ENST00000375299 GOT1P17174 413 aa21.58■■□□□ 1.05
UPF3A-202ENST00000375299 PPARGP37231 505 aaPredicted RBP21.58■■□□□ 1.05
UPF3A-202ENST00000375299 ZDHHC17Q8IUH5 632 aa21.58■■□□□ 1.05
UPF3A-202ENST00000375299 GALNT4Q8N4A0 578 aa21.58■■□□□ 1.05
UPF3A-202ENST00000375299 SLC35F5Q8WV83 523 aa21.58■■□□□ 1.05
UPF3A-202ENST00000375299 USP13Q92995 863 aaPredicted RBP21.58■■□□□ 1.05
UPF3A-202ENST00000375299 CEP41Q9BYV8 373 aa21.58■■□□□ 1.05
UPF3A-202ENST00000375299 ZNF385DQ9H6B1 395 aa21.58■■□□□ 1.05
UPF3A-202ENST00000375299 SUDS3Q9H7L9 328 aaPredicted RBP21.58■■□□□ 1.05
UPF3A-202ENST00000375299 RAP2CQ9Y3L5 183 aa21.58■■□□□ 1.05
UPF3A-202ENST00000375299 A0A0J9YVX5 310 aa21.58■■□□□ 1.04
UPF3A-202ENST00000375299 MFSD11O43934 449 aa21.58■■□□□ 1.04
UPF3A-202ENST00000375299 CHRNGP07510 517 aa21.58■■□□□ 1.04
UPF3A-202ENST00000375299 IQCF3P0C7M6 154 aa21.58■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms