RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 RPL10LQ96L21 214 aaKnown RBP22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 TBCBQ99426 244 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 ZDHHC5Q9C0B5 715 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 TKTL2Q9H0I9 626 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 SLC32A1Q9H598 525 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 WDCPQ9H6R7 721 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 ANLNQ9NQW6 1124 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 LIMA1Q9UHB6 759 aaKnown RBP22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 ANGPTL2Q9UKU9 493 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 SIK3Q9Y2K2 1263 aa22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 ZBTB32Q9Y2Y4 487 aaPredicted RBP22.36■■□□□ 1.17
CCDC28B-201ENST00000373602 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 FAM170AA1A519 330 aa22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 I6L893 689 aaPredicted RBP22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 EPHB6O15197 1021 aa22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 GJB3O75712 270 aa22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 MBD3O95983 291 aa22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 SOX5P35711 763 aa22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 FLT3P36888 993 aa22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 GGCXP38435 758 aa22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 STK19P49842 368 aaPredicted RBP22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 DEUP1Q05D60 604 aa22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 ZNF177Q13360 481 aaPredicted RBP22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 CST6Q15828 149 aa22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 NAA35Q5VZE5 725 aa22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 SND1Q7KZF4 910 aaKnown RBP eCLIP22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 SLC20A1Q8WUM9 679 aa22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 PTPRN2Q92932 1015 aa22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 PPP1R9BQ96SB3 815 aa22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 FAM129BQ96TA1 746 aa22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 SIK2Q9H0K1 926 aa22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 NLRC4Q9NPP4 1024 aa22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 TMEM59LQ9UK28 342 aa22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 NCKAP1Q9Y2A7 1128 aa22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 PAXBP1Q9Y5B6 917 aa22.35■■□□□ 1.17
CCDC28B-201ENST00000373602 GOLGA8SH3BPF8 625 aa22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 CLDN11O75508 207 aa22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 CYP1A1P04798 512 aaPredicted RBP22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 CD59P13987 128 aa22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 CHRNB2P17787 502 aa22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 NNMTP40261 264 aa22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 VASPP50552 380 aaPredicted RBP22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 CDH4P55283 916 aa22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 CDR2Q01850 454 aa22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 SFSWAPQ12872 951 aaKnown RBP22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 CCDC183Q5T5S1 534 aa22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 TRNP1Q6NT89 227 aa22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 ARCQ7LC44 396 aa22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 BNIPLQ7Z465 357 aa22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 MMAAQ8IVH4 418 aaKnown RBP22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 ANKRD20A12PQ8NF67 263 aa22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 OR52K2Q8NGK3 314 aa22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 FEM1AQ9BSK4 669 aa22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 FBXL12Q9NXK8 326 aa22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 TBC1D30Q9Y2I9 924 aa22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 TPRP12270 2363 aaKnown RBP22.34■■□□□ 1.17
CCDC28B-201ENST00000373602 LRRC10BA6NIK2 292 aa22.33■■□□□ 1.17
CCDC28B-201ENST00000373602 MID1O15344 667 aa22.33■■□□□ 1.17
CCDC28B-201ENST00000373602 NUMBP49757 651 aa22.33■■□□□ 1.17
CCDC28B-201ENST00000373602 FMO1Q01740 532 aa22.33■■□□□ 1.17
CCDC28B-201ENST00000373602 SLC14A1Q13336 389 aa22.33■■□□□ 1.17
CCDC28B-201ENST00000373602 SYCP1Q15431 976 aa22.33■■□□□ 1.17
CCDC28B-201ENST00000373602 ZNF683Q8IZ20 524 aa22.33■■□□□ 1.17
CCDC28B-201ENST00000373602 STK40Q8N2I9 435 aa22.33■■□□□ 1.17
CCDC28B-201ENST00000373602 SNX19Q92543 992 aa22.33■■□□□ 1.17
CCDC28B-201ENST00000373602 BIRC7Q96CA5 298 aa22.33■■□□□ 1.17
CCDC28B-201ENST00000373602 C1orf74Q96LT6 269 aa22.33■■□□□ 1.17
CCDC28B-201ENST00000373602 SPAG5Q96R06 1193 aa22.33■■□□□ 1.17
CCDC28B-201ENST00000373602 OSGEPQ9NPF4 335 aa22.33■■□□□ 1.17
CCDC28B-201ENST00000373602 SERGEFQ9UGK8 458 aa22.33■■□□□ 1.17
CCDC28B-201ENST00000373602 OR51B4Q9Y5P0 310 aa22.33■■□□□ 1.17
CCDC28B-201ENST00000373602 PCNX2A6NKB5 2137 aa22.32■■□□□ 1.16
CCDC28B-201ENST00000373602 LGALS16A8MUM7 142 aa22.32■■□□□ 1.16
CCDC28B-201ENST00000373602 ZNF18P17022 549 aa22.32■■□□□ 1.16
CCDC28B-201ENST00000373602 SLC8A1P32418 973 aa22.32■■□□□ 1.16
CCDC28B-201ENST00000373602 STAT1P42224 750 aa22.32■■□□□ 1.16
CCDC28B-201ENST00000373602 BNC1Q01954 994 aa22.32■■□□□ 1.16
CCDC28B-201ENST00000373602 NCAPHQ15003 741 aa22.32■■□□□ 1.16
CCDC28B-201ENST00000373602 ACBD5Q5T8D3 534 aaPredicted RBP22.32■■□□□ 1.16
CCDC28B-201ENST00000373602 GANCQ8TET4 914 aa22.32■■□□□ 1.16
CCDC28B-201ENST00000373602 FRS2Q8WU20 508 aa22.32■■□□□ 1.16
CCDC28B-201ENST00000373602 ADAMTS1Q9UHI8 967 aa22.32■■□□□ 1.16
CCDC28B-201ENST00000373602 SNX10Q9Y5X0 201 aa22.32■■□□□ 1.16
CCDC28B-201ENST00000373602 SLCO1B1Q9Y6L6 691 aa22.32■■□□□ 1.16
CCDC28B-201ENST00000373602 A0A1W2PP55 124 aa22.31■■□□□ 1.16
CCDC28B-201ENST00000373602 DRGXA6NNA5 263 aa22.31■■□□□ 1.16
CCDC28B-201ENST00000373602 CNTN5O94779 1100 aa22.31■■□□□ 1.16
CCDC28B-201ENST00000373602 FSBPO95073 299 aa22.31■■□□□ 1.16
CCDC28B-201ENST00000373602 MMP8P22894 467 aa22.31■■□□□ 1.16
CCDC28B-201ENST00000373602 CD27P26842 260 aa22.31■■□□□ 1.16
CCDC28B-201ENST00000373602 ELAVL3Q14576 367 aaKnown RBP22.31■■□□□ 1.16
CCDC28B-201ENST00000373602 ALFQ53S48 1182 aa22.31■■□□□ 1.16
CCDC28B-201ENST00000373602 IL27RAQ6UWB1 636 aa22.31■■□□□ 1.16
CCDC28B-201ENST00000373602 TRIM72Q6ZMU5 477 aa22.31■■□□□ 1.16
CCDC28B-201ENST00000373602 APTXQ7Z2E3 356 aaKnown RBP22.31■■□□□ 1.16
CCDC28B-201ENST00000373602 CFAP57Q96MR6 1250 aa22.31■■□□□ 1.16
CCDC28B-201ENST00000373602 ERGIC2Q96RQ1 377 aa22.31■■□□□ 1.16
CCDC28B-201ENST00000373602 ORAI3Q9BRQ5 295 aa22.31■■□□□ 1.16
CCDC28B-201ENST00000373602 NEUROG2Q9H2A3 272 aa22.31■■□□□ 1.16
CCDC28B-201ENST00000373602 HSD3B7Q9H2F3 369 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms