RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 LGALS2P05162 132 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 DBIP07108 87 aaKnown RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 PTPN1P18031 435 aaKnown RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 PSMB9P28065 219 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 CYP2C18P33260 490 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 PSMD8P48556 350 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 GALK1P51570 392 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 KCNMA1Q12791 1236 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 INTS6LQ5JSJ4 861 aaKnown RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 IL27RAQ6UWB1 636 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 SYT12Q8IV01 421 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 OR52K2Q8NGK3 314 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 OLFM1Q99784 485 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 POMKQ9H5K3 350 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 TRMT13Q9NUP7 481 aaKnown RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 J3QRK9 145 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 OR6B1O95007 311 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 DNTTP04053 509 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 AQP5P55064 265 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 GRM2Q14416 872 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 NOMO2Q5JPE7 1267 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 MYLPFQ96A32 169 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 FAM120BQ96EK7 910 aaKnown RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 ZNF304Q9HCX3 659 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 SLC35C2Q9NQQ7 365 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 PTPRJQ12913 1337 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 C2orf71A6NGG8 1288 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 FOXO6A8MYZ6 492 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 ZBTB14O43829 449 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 AQP1P29972 269 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 SHMT1P34896 483 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 ATXN1P54253 815 aaKnown RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 SRP54P61011 504 aaKnown RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 INPP5AQ14642 412 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 CHERPQ8IWX8 916 aaKnown RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 PARP9Q8IXQ6 854 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 RIT2Q99578 217 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 WDR41Q9HAD4 459 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 RGS18Q9NS28 235 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 AAR2Q9Y312 384 aaKnown RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 GTPBP1O00178 669 aaKnown RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 PAPSS1O43252 624 aaPredicted RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 PSMB4P28070 264 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 OC90Q02509 493 aaPredicted RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 CCDC15Q0P6D6 951 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 CARTPTQ16568 116 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 MLIPQ5VWP3 458 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 CCDC149Q6ZUS6 474 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 PPIL6Q8IXY8 311 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 CLYBLQ8N0X4 340 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 HDAC7Q8WUI4 952 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 CNOT10Q9H9A5 744 aaKnown RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 MAN1A2O60476 641 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 ALDH4A1P30038 563 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 ABCE1P61221 599 aaKnown RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 CCNI2Q6ZMN8 369 aaPredicted RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 Q8N9G6 341 aaPredicted RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 PCYOX1LQ8NBM8 494 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 CALML6Q8TD86 181 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 C12orf65Q9H3J6 166 aaKnown RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 PSMC3IPQ9P2W1 217 aaPredicted RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 OGDHLQ9ULD0 1010 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 AVILO75366 819 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 NT5C2P49902 561 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 MYBPC1Q00872 1141 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 FRMD6Q96NE9 622 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 TINF2Q9BSI4 451 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 ACTR5Q9H9F9 607 aaPredicted RBP7.48□□□□□ -1.21
VPS13A-202ENST00000357409 WDR35Q9P2L0 1181 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 EGFL7Q9UHF1 273 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 ZW10O43264 779 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 FARP2O94887 1054 aaPredicted RBP7.48□□□□□ -1.21
VPS13A-202ENST00000357409 EPHX1P07099 455 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 NT5EP21589 574 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 RYKP34925 604 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 PGDP52209 483 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 PPP2R2DQ66LE6 453 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 SPATS2Q86XZ4 545 aaKnown RBP7.48□□□□□ -1.21
VPS13A-202ENST00000357409 OR5B17Q8NGF7 314 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 LOC105378220A0A1B0GUY1 285 aaPredicted RBP7.48□□□□□ -1.21
VPS13A-202ENST00000357409 CPSF4LA6NMK7 179 aaKnown RBP7.48□□□□□ -1.21
VPS13A-202ENST00000357409 CRTAMO95727 393 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 SMIM10L2AP0DMW4 78 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 SMIM10L2BP0DMW5 78 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 LBPP18428 481 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 ST13P50502 369 aaKnown RBP7.48□□□□□ -1.21
VPS13A-202ENST00000357409 PRKCZQ05513 592 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 ITIH5Q86UX2 942 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 CFAP206Q8IYR0 622 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 TSPAN17Q96FV3 270 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 MTA3Q9BTC8 594 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 DGCR6LQ9BY27 220 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 SMG9Q9H0W8 520 aaKnown RBP7.48□□□□□ -1.21
VPS13A-202ENST00000357409 AKAP7Q9P0M2 348 aaPredicted RBP7.48□□□□□ -1.21
VPS13A-202ENST00000357409 ZNF624Q9P2J8 865 aaPredicted RBP7.48□□□□□ -1.21
VPS13A-202ENST00000357409 SHOX2O60902 331 aaPredicted RBP7.48□□□□□ -1.21
VPS13A-202ENST00000357409 CCDC103Q8IW40 242 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 PRCCQ92733 491 aaPredicted RBP7.48□□□□□ -1.21
VPS13A-202ENST00000357409 TBCBQ99426 244 aa7.48□□□□□ -1.21
VPS13A-202ENST00000357409 SLC12A4Q9UP95 1085 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms