RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 MBLAC2Q68D91 279 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 ATG14Q6ZNE5 492 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 TREML1Q86YW5 311 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 SOCS4Q8WXH5 440 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 NUDCD1Q96RS6 583 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 RNPEPL1Q9HAU8 725 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 TMEM216Q9P0N5 145 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 PADI3Q9ULW8 664 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 GIT1Q9Y2X7 761 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 CCDC78A2IDD5 438 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 GSC2O15499 205 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 PLIN3O60664 434 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 HNRNPCL1O60812 293 aaKnown RBP19.8■□□□□ 0.76
COL9A3-201ENST00000343916 GLRA3O75311 464 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 FGF3P11487 239 aaPredicted RBP19.8■□□□□ 0.76
COL9A3-201ENST00000343916 THPOP40225 353 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 CXCR3P49682 368 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 PCLAFQ15004 111 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 SERINC5Q86VE9 423 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 LRRTM3Q86VH5 581 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 IFNL1Q8IU54 200 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.8■□□□□ 0.76
COL9A3-201ENST00000343916 ACMSDQ8TDX5 336 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 LBHD1Q9BQE6 289 aaPredicted RBP19.8■□□□□ 0.76
COL9A3-201ENST00000343916 SIK2Q9H0K1 926 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 CSNK1G1Q9HCP0 422 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 CHST12Q9NRB3 414 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 ITGB1P05556 798 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 ENO1P06733 434 aaKnown RBP19.8■□□□□ 0.76
COL9A3-201ENST00000343916 GP5P40197 560 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 HCAR3P49019 387 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 SPANXN3Q5MJ09 141 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 KCTD11Q693B1 232 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 USP33Q8TEY7 942 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 ATP2A3Q93084 1043 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 HDAC11Q96DB2 347 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 ZNF778Q96MU6 729 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 EPAS1Q99814 870 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 GBA3Q9H227 469 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 LRRC40Q9H9A6 602 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 THAP1Q9NVV9 213 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 BFARQ9NZS9 450 aa19.8■□□□□ 0.76
COL9A3-201ENST00000343916 ZCWPW2A0A1B0GU75 182 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 MANSC4A6NHS7 340 aaPredicted RBP19.79■□□□□ 0.76
COL9A3-201ENST00000343916 GOLGA8TH3BQL2 631 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 JCHAINP01591 159 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 YY1P25490 414 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 TTC3P53804 2025 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 ALDH18A1P54886 795 aaKnown RBP19.79■□□□□ 0.76
COL9A3-201ENST00000343916 RCN2Q14257 317 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 HSP90AA5PQ58FG0 334 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 RWDD4Q6NW29 188 aaKnown RBP19.79■□□□□ 0.76
COL9A3-201ENST00000343916 EP400NLQ6ZTU2 488 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 C10orf107Q8IVU9 208 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.79■□□□□ 0.76
COL9A3-201ENST00000343916 OR10T2Q8NGX3 314 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 FBXO27Q8NI29 283 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 RILPQ96NA2 401 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 ARHGAP39Q9C0H5 1083 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 CHRAC1Q9NRG0 131 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 NCAM2O15394 837 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 F9P00740 461 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 ODC1P11926 461 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 RPL9P32969 192 aaKnown RBP19.79■□□□□ 0.76
COL9A3-201ENST00000343916 GALNT2Q10471 571 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 CRHR2Q13324 411 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 KRT72Q14CN4 511 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 C4orf50Q6ZRC1 276 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 ARHGAP36Q6ZRI8 547 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 STRA8Q7Z7C7 330 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 DCLK2Q8N568 766 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 RAB3IL1Q8TBN0 382 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 CPNE1Q99829 537 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 WWP1Q9H0M0 922 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 SLC24A3Q9HC58 644 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 CASS4Q9NQ75 786 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 SNX15Q9NRS6 342 aa19.79■□□□□ 0.76
COL9A3-201ENST00000343916 BPTFQ12830 3046 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 ARHGAP42A6NI28 874 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 GPR182O15218 404 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 PGFP49763 221 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 MGAT3Q09327 533 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 TRIM32Q13049 653 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 DLG2Q15700 870 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 INTS6LQ5JSJ4 861 aaKnown RBP19.78■□□□□ 0.76
COL9A3-201ENST00000343916 TMEM135Q86UB9 458 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 TNS4Q8IZW8 715 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 PLD6Q8N2A8 252 aaKnown RBP19.78■□□□□ 0.76
COL9A3-201ENST00000343916 DQX1Q8TE96 717 aaKnown RBP19.78■□□□□ 0.76
COL9A3-201ENST00000343916 TRIB2Q92519 343 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 TUBB6Q9BUF5 446 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 CAB39LQ9H9S4 337 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 DCDC2Q9UHG0 476 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 DNAJC16Q9Y2G8 782 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 CAPN14A8MX76 684 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 TPBGLP0DKB5 382 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 CYBAP13498 195 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 ARRB2P32121 409 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 SLC1A6P48664 564 aa19.78■□□□□ 0.76
COL9A3-201ENST00000343916 ANKRD20A4Q4UJ75 823 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms