RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 UBE2E3Q969T4 207 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 ANAPC2Q9UJX6 822 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 LZTS1Q9Y250 596 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 ZSCAN5CA6NGD5 496 aaPredicted RBP10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 DPYSL4O14531 572 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 ATP6V1B2P21281 511 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 LRPAP1P30533 357 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 HOXA10P31260 410 aaPredicted RBP10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 INTS11Q5TA45 600 aaKnown RBP10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 MICALL2Q8IY33 904 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 CHST12Q9NRB3 414 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 MTF2Q9Y483 593 aaPredicted RBP10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 F5H423 210 aaPredicted RBP10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 RGS14O43566 566 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 STX11O75558 287 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 CRHR1P34998 444 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 CCDC85BQ15834 202 aaPredicted RBP10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 MTX3Q5HYI7 312 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 TRIQKQ629K1 86 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 CDC73Q6P1J9 531 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 PANX3Q96QZ0 392 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 GORASP1Q9BQQ3 440 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 POPDC2Q9HBU9 364 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 POLD4Q9HCU8 107 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 PSMD12O00232 456 aaPredicted RBP10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 HDAC3O15379 428 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 RPN2P04844 631 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 ABCB1P08183 1280 aaPredicted RBP10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 ANPEPP15144 967 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 ITGA2P17301 1181 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 GLRA2P23416 452 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 SSTR3P32745 418 aaPredicted RBP10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 GALNTL6Q49A17 601 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 PROSER1Q86XN7 944 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 NKAPQ8N5F7 415 aaKnown RBP10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 ETNK2Q9NVF9 386 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 EDF1O60869 148 aaKnown RBP10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 SKAP2O75563 359 aaPredicted RBP10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 PABPC1P11940 636 aaKnown RBP10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 PAX7P23759 505 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 PCID2Q5JVF3 399 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 DEPDC4Q8N2C3 294 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 NKX2-3Q8TAU0 364 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 FAM118BQ9BPY3 351 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 DNAJC28Q9NX36 388 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 CDH18Q13634 790 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 PDK3Q15120 406 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 MARC1Q5VT66 337 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 HOPXQ9BPY8 73 aaPredicted RBP10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 IL1RL2Q9HB29 575 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 PNPLA8Q9NP80 782 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 SLC12A4Q9UP95 1085 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 THP07101 528 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 RAP1GAPP47736 663 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 TRIM71Q2Q1W2 868 aaKnown RBP10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 LENG9Q96B70 501 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 DERAQ9Y315 318 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 MAST2Q6P0Q8 1798 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 MGAT4DA6NG13 374 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 ATP5F1P24539 256 aaPredicted RBP10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 JAM2P57087 298 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 TRAF2Q12933 501 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 KLHL12Q53G59 568 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 FAM120BQ96EK7 910 aaKnown RBP10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 MRASO14807 208 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 TBC1D12O60347 775 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 GPR162Q16538 588 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 C10orf120Q5SQS8 335 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 ARMC3Q5W041 872 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 FBXW8Q8N3Y1 598 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 RFWD2Q8NHY2 731 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 UBA3Q8TBC4 463 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 STAG3L4Q8TBR4 150 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 TLCD1Q96CP7 247 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 CERS2Q96G23 380 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 OTUD5Q96G74 571 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 AAASQ9NRG9 546 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 CACNA2D2Q9NY47 1150 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 PROCP04070 461 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 ATXN3P54252 364 aaPredicted RBP10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 SMIM11AP58511 58 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 ACCSLQ4AC99 568 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 RIPOR1Q6ZS17 1223 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 TTYH3Q9C0H2 523 aa10.47□□□□□ -0.73
CCDC88A-202ENST00000336838 WDR27A2RRH5 827 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 KCNH1O95259 989 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 UQCRBP14927 111 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 MIPP30301 263 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 GRK3P35626 688 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 CBWD6Q4V339 395 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 CBWD3Q5JTY5 395 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 CBWD5Q5RIA9 395 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 OR7A2PQ8NGA2 310 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 ITFG1Q8TB96 612 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 BORCS5Q969J3 196 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 TLR8Q9NR97 1041 aaKnown RBP10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 PRG3Q9Y2Y8 225 aaPredicted RBP10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 DCXO43602 365 aa10.46□□□□□ -0.73
CCDC88A-202ENST00000336838 CHI3L1P36222 383 aaPredicted RBP10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms