RNA–Protein interactions for RNA: ENST00000336180.6

LIMK1-201, Transcript of LIM domain kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMK1, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-201ENST00000336180 FAM124BQ9H5Z6 455 aaPredicted RBP12.88□□□□□ -0.35
LIMK1-201ENST00000336180 CSNK1G1Q9HCP0 422 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.88□□□□□ -0.35
LIMK1-201ENST00000336180 IQANK1A0A1B0GTG1 560 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 BUD23O43709 281 aaKnown RBP12.88□□□□□ -0.35
LIMK1-201ENST00000336180 KCNJ2P63252 427 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 PLEKHG4Q58EX7 1191 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 RASSF3Q86WH2 238 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 TDRPQ86YL5 185 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 ANKLE1Q8NAG6 615 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 AGR3Q8TD06 166 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 DHRS4Q9BTZ2 278 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 CCSER2Q9H7U1 834 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 CYLDQ9NQC7 956 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 A8MUI8 341 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 ARVCFO00192 962 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 IRAK2O43187 625 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 SPATA31D3P0C874 917 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 HOXD10P28358 340 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 AVPR1AP37288 418 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 GARSP41250 739 aaKnown RBP12.88□□□□□ -0.35
LIMK1-201ENST00000336180 TAF10Q12962 218 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 SEMA3BQ13214 749 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 XRCC4Q13426 336 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 CRYMQ14894 314 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 ALFQ53S48 1182 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 C10orf120Q5SQS8 335 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 RAP1GAP2Q684P5 730 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 SPATA31D4Q6ZUB0 917 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 BNIPLQ7Z465 357 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 RIBC1Q8N443 379 aaPredicted RBP12.88□□□□□ -0.35
LIMK1-201ENST00000336180 PABPC5Q96DU9 382 aaKnown RBP12.88□□□□□ -0.35
LIMK1-201ENST00000336180 RNF208Q9H0X6 261 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 VPS11Q9H270 941 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 HS3ST4Q9Y661 456 aa12.88□□□□□ -0.35
LIMK1-201ENST00000336180 TNFRSF10BO14763 440 aa12.87□□□□□ -0.35
LIMK1-201ENST00000336180 SUN1O94901 812 aa12.87□□□□□ -0.35
LIMK1-201ENST00000336180 FAM163BP0C2L3 166 aa12.87□□□□□ -0.35
LIMK1-201ENST00000336180 SCNN1AP37088 669 aa12.87□□□□□ -0.35
LIMK1-201ENST00000336180 NR1H3Q13133 447 aa12.87□□□□□ -0.35
LIMK1-201ENST00000336180 PAFAH1B3Q15102 231 aaKnown RBP12.87□□□□□ -0.35
LIMK1-201ENST00000336180 RASIP1Q5U651 963 aa12.87□□□□□ -0.35
LIMK1-201ENST00000336180 RFWD3Q6PCD5 774 aa12.87□□□□□ -0.35
LIMK1-201ENST00000336180 ERP27Q96DN0 273 aa12.87□□□□□ -0.35
LIMK1-201ENST00000336180 CDY1Q9Y6F8 540 aa12.87□□□□□ -0.35
LIMK1-201ENST00000336180 SDR42E2A6NKP2 422 aa12.87□□□□□ -0.35
LIMK1-201ENST00000336180 TPP1O14773 563 aa12.87□□□□□ -0.35
LIMK1-201ENST00000336180 RFPL1O75677 317 aa12.87□□□□□ -0.35
LIMK1-201ENST00000336180 PAX3P23760 479 aa12.87□□□□□ -0.35
LIMK1-201ENST00000336180 TARSP26639 723 aaKnown RBP12.87□□□□□ -0.35
LIMK1-201ENST00000336180 CST5P28325 142 aaPredicted RBP12.87□□□□□ -0.35
LIMK1-201ENST00000336180 SEPT6Q14141 434 aa12.87□□□□□ -0.35
LIMK1-201ENST00000336180 SPOUT1Q5T280 376 aaKnown RBP12.87□□□□□ -0.35
LIMK1-201ENST00000336180 FBXO32Q969P5 355 aa12.87□□□□□ -0.35
LIMK1-201ENST00000336180 ADAM28Q9UKQ2 775 aa12.87□□□□□ -0.35
LIMK1-201ENST00000336180 PCDHA11Q9Y5I1 949 aa12.87□□□□□ -0.35
LIMK1-201ENST00000336180 J3KR12 359 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 LYPLA1O75608 230 aaPredicted RBP12.86□□□□□ -0.35
LIMK1-201ENST00000336180 TOMM70O94826 608 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 CBX6O95503 412 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 SLC4A1P02730 911 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 PRKCGP05129 697 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 SELPP16109 830 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 NMBRP28336 390 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 KCNQ1P51787 676 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 RPL10AP62906 217 aaKnown RBP12.86□□□□□ -0.35
LIMK1-201ENST00000336180 PDE1BQ01064 536 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 ACTN3Q08043 901 aaPredicted RBP12.86□□□□□ -0.35
LIMK1-201ENST00000336180 PIK3R6Q5UE93 754 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 TTC39BQ5VTQ0 682 aaPredicted RBP12.86□□□□□ -0.35
LIMK1-201ENST00000336180 PM20D1Q6GTS8 502 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 C4orf50Q6ZRC1 276 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 TNS4Q8IZW8 715 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 ATPAF2Q8N5M1 289 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 TSPAN18Q96SJ8 248 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 ECT2Q9H8V3 914 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 FBXO6Q9NRD1 293 aaPredicted RBP12.86□□□□□ -0.35
LIMK1-201ENST00000336180 PCDHB8Q9UN66 801 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 ZNF232Q9UNY5 417 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 THSD7BQ9C0I4 1608 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 SLC12A8A0AV02 714 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 PRPF4O43172 522 aaKnown RBP eCLIP12.86□□□□□ -0.35
LIMK1-201ENST00000336180 CYP11A1P05108 521 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 SNRPAP09012 282 aaKnown RBP12.86□□□□□ -0.35
LIMK1-201ENST00000336180 PIRTP0C851 137 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 IRF1P10914 325 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 HAPLN1P10915 354 aaPredicted RBP12.86□□□□□ -0.35
LIMK1-201ENST00000336180 DSC1Q08554 894 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 ZNF460Q14592 562 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 ARCQ7LC44 396 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 DIS3LQ8TF46 1054 aaKnown RBP12.86□□□□□ -0.35
LIMK1-201ENST00000336180 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.86□□□□□ -0.35
LIMK1-201ENST00000336180 MYLK2Q9H1R3 596 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 CCDC134Q9H6E4 229 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 MANSC1Q9H8J5 431 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 ZFATQ9P243 1243 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 KLHL14Q9P2G3 628 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 SLC2A6Q9UGQ3 507 aa12.86□□□□□ -0.35
LIMK1-201ENST00000336180 SMG5Q9UPR3 1016 aaKnown RBP12.86□□□□□ -0.35
LIMK1-201ENST00000336180 XIRP2A4UGR9 3374 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms