RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 THAP2Q9H0W7 228 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 WDCPQ9H6R7 721 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 INVSQ9Y283 1065 aa14.53□□□□□ -0.08
COL7A1-201ENST00000328333 PGRMC2O15173 223 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 ASMTLO95671 621 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 KCNJ1P48048 391 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 DGCR6Q14129 220 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 RPRD1AQ96P16 312 aaPredicted RBP14.52□□□□□ -0.08
COL7A1-201ENST00000328333 KIAA1683Q9H0B3 1180 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 MAGEE1Q9HCI5 957 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 NMRK2Q9NPI5 230 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 AGAP1Q9UPQ3 857 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 TNS3Q68CZ2 1445 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 LRIG2O94898 1065 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 ATF7IP2Q5U623 682 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 KCNMB4Q86W47 210 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 C1QTNF1Q9BXJ1 281 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 CHKBQ9Y259 395 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 MRASO14807 208 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 TDP2O95551 362 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 ERCC2P18074 760 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 MZF1P28698 734 aaPredicted RBP14.52□□□□□ -0.08
COL7A1-201ENST00000328333 NT5DC4Q86YG4 428 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 MEIOBQ8N635 442 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 B3GALNT2Q8NCR0 500 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 MKLN1Q9UL63 735 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 SH3BP1Q9Y3L3 701 aa14.52□□□□□ -0.08
COL7A1-201ENST00000328333 SRP54P61011 504 aaKnown RBP14.52□□□□□ -0.08
COL7A1-201ENST00000328333 ATMINO43313 823 aaPredicted RBP14.52□□□□□ -0.09
COL7A1-201ENST00000328333 ERMAPQ96PL5 475 aaPredicted RBP14.52□□□□□ -0.09
COL7A1-201ENST00000328333 CYP3A43Q9HB55 503 aa14.52□□□□□ -0.09
COL7A1-201ENST00000328333 BBIP1A8MTZ0 92 aa14.52□□□□□ -0.09
COL7A1-201ENST00000328333 PMPCBO75439 489 aa14.52□□□□□ -0.09
COL7A1-201ENST00000328333 ITIH1P19827 911 aa14.52□□□□□ -0.09
COL7A1-201ENST00000328333 TCP10LQ8TDR4 215 aa14.52□□□□□ -0.09
COL7A1-201ENST00000328333 PYDC1Q8WXC3 89 aa14.52□□□□□ -0.09
COL7A1-201ENST00000328333 UMODL1Q5DID0 1318 aa14.52□□□□□ -0.09
COL7A1-201ENST00000328333 ZNF609O15014 1411 aa14.52□□□□□ -0.09
COL7A1-201ENST00000328333 TGDSO95455 350 aa14.52□□□□□ -0.09
COL7A1-201ENST00000328333 MLYCDO95822 493 aa14.52□□□□□ -0.09
COL7A1-201ENST00000328333 PROCP04070 461 aa14.52□□□□□ -0.09
COL7A1-201ENST00000328333 TPD52L3Q96J77 140 aa14.52□□□□□ -0.09
COL7A1-201ENST00000328333 MMP19Q99542 508 aa14.52□□□□□ -0.09
COL7A1-201ENST00000328333 TRIM2Q9C040 744 aa14.52□□□□□ -0.09
COL7A1-201ENST00000328333 SMURF2Q9HAU4 748 aa14.52□□□□□ -0.09
COL7A1-201ENST00000328333 A0A087X0T9 212 aa14.52□□□□□ -0.09
COL7A1-201ENST00000328333 AKAP8O43823 692 aaKnown RBP14.52□□□□□ -0.09
COL7A1-201ENST00000328333 FAM228BP0C875 321 aa14.52□□□□□ -0.09
COL7A1-201ENST00000328333 SPPL2AQ8TCT8 520 aa14.52□□□□□ -0.09
COL7A1-201ENST00000328333 PHF10Q8WUB8 498 aaKnown RBP14.52□□□□□ -0.09
COL7A1-201ENST00000328333 MTMR12Q9C0I1 747 aa14.52□□□□□ -0.09
COL7A1-201ENST00000328333 MYMKA6NI61 221 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 PPIBP23284 216 aaKnown RBP14.51□□□□□ -0.09
COL7A1-201ENST00000328333 MRPS22P82650 360 aaKnown RBP14.51□□□□□ -0.09
COL7A1-201ENST00000328333 PRKCEQ02156 737 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 HKDC1Q2TB90 917 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 PAGE2BQ5JRK9 111 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 STRIP1Q5VSL9 837 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 SMYD1Q8NB12 490 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 HPS1Q92902 700 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 CLCC1Q96S66 551 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 PIN4Q9Y237 131 aaKnown RBP14.51□□□□□ -0.09
COL7A1-201ENST00000328333 H7C1W4 665 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 SKIV2LQ15477 1246 aaKnown RBP14.51□□□□□ -0.09
COL7A1-201ENST00000328333 POLR1DQ9Y2S0 133 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 KNTC1P50748 2209 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 H3BQF6 201 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 DCXO43602 365 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 GLRA4Q5JXX5 417 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 C12orf66Q96MD2 445 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 CDRT15Q96T59 188 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 PTTG2Q9NZH5 202 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 SNX8Q9Y5X2 465 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 EIF5AP63241 154 aaKnown RBP14.51□□□□□ -0.09
COL7A1-201ENST00000328333 PDK4Q16654 411 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 KCTD21Q4G0X4 260 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 NT5DC1Q5TFE4 455 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 PEX5LQ8IYB4 626 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 CLYBLQ8N0X4 340 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 IKZF3Q9UKT9 509 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 SGTAO43765 313 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 MFSD14CQ5VZR4 134 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 PYHIN1Q6K0P9 492 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 ZNF662Q6ZS27 426 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 EEPD1Q7L9B9 569 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 AGPAT3Q9NRZ7 376 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 PP2D1A8MPX8 630 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 UGT2B11O75310 529 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 GLI1P08151 1106 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 POLNQ7Z5Q5 900 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 CD101Q93033 1021 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 GMIPQ9P107 970 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 A0A0G2JPF8 293 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 HNRNPCL3B7ZW38 293 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 PLOD3O60568 738 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 EGFRP00533 1210 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 SERPINF2P08697 491 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 HNRNPCL4P0DMR1 293 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 PRG2P13727 222 aa14.51□□□□□ -0.09
COL7A1-201ENST00000328333 PSMA1P25786 263 aaKnown RBP14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms