RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 KLHL11Q9NVR0 708 aa12.39□□□□□ -0.43
SCFD1-201ENST00000311943 RRN3Q9NYV6 651 aa12.39□□□□□ -0.43
SCFD1-201ENST00000311943 BCCIPQ9P287 314 aaKnown RBP eCLIP12.39□□□□□ -0.43
SCFD1-201ENST00000311943 MBD1Q9UIS9 605 aaPredicted RBP12.39□□□□□ -0.43
SCFD1-201ENST00000311943 DOCK4Q8N1I0 1966 aa12.39□□□□□ -0.43
SCFD1-201ENST00000311943 IGLV3-10A0A075B6K4 115 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 SMAD6O43541 496 aaKnown RBP12.38□□□□□ -0.43
SCFD1-201ENST00000311943 BNIP3LO60238 219 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 APBB3O95704 486 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 ENPP2Q13822 863 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 SIM2Q14190 667 aaPredicted RBP12.38□□□□□ -0.43
SCFD1-201ENST00000311943 SLC18A3Q16572 532 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 C5orf22Q49AR2 442 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 EOGTQ5NDL2 527 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 SLFN11Q7Z7L1 901 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 NKD2Q969F2 451 aaPredicted RBP12.38□□□□□ -0.43
SCFD1-201ENST00000311943 ACDQ96AP0 544 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 VCPIP1Q96JH7 1222 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 NOL6Q9H6R4 1146 aaKnown RBP12.38□□□□□ -0.43
SCFD1-201ENST00000311943 ZWILCHQ9H900 591 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 ANAPC7Q9UJX3 599 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 ERVW-1Q9UQF0 538 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.38□□□□□ -0.43
SCFD1-201ENST00000311943 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 TMEM110-MUSTN1A8MSY1 372 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 AKR1B10O60218 316 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 CD48P09326 243 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 DLDP09622 509 aaKnown RBP12.38□□□□□ -0.43
SCFD1-201ENST00000311943 POLR2EP19388 210 aaKnown RBP12.38□□□□□ -0.43
SCFD1-201ENST00000311943 OR1E1P30953 314 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 ZNF177Q13360 481 aaPredicted RBP12.38□□□□□ -0.43
SCFD1-201ENST00000311943 KIAA1324Q6UXG2 1013 aaKnown RBP12.38□□□□□ -0.43
SCFD1-201ENST00000311943 FAM124AQ86V42 546 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 NLRP14Q86W24 1093 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 TMEFF1Q8IYR6 380 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 LRRN4Q8WUT4 740 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 HAPLN3Q96S86 360 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 KCTD15Q96SI1 283 aaPredicted RBP12.38□□□□□ -0.43
SCFD1-201ENST00000311943 DDX50Q9BQ39 737 aaKnown RBP12.38□□□□□ -0.43
SCFD1-201ENST00000311943 PRSS16Q9NQE7 514 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 KIAA1522Q9P206 1035 aaPredicted RBP12.38□□□□□ -0.43
SCFD1-201ENST00000311943 SERGEFQ9UGK8 458 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 CYP8B1Q9UNU6 501 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 TBC1D30Q9Y2I9 924 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 SLCO1B1Q9Y6L6 691 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 OTOGLQ3ZCN5 2332 aa12.38□□□□□ -0.43
SCFD1-201ENST00000311943 RCCD1A6NED2 376 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 GFRA3O60609 400 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 SIN3BO75182 1162 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 RPP40O75818 363 aaKnown RBP12.37□□□□□ -0.43
SCFD1-201ENST00000311943 CD160O95971 181 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 CYP1A2P05177 515 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 GJC1P36383 396 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 PTGER3P43115 390 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 TAS2R40P59535 323 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 RABGAP1LQ5R372 815 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 WDR5BQ86VZ2 330 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 TMPRSS6Q8IU80 811 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 PTPRN2Q92932 1015 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 EXOC4Q96A65 974 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 TTC17Q96AE7 1141 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 CELF6Q96J87 481 aaKnown RBP12.37□□□□□ -0.43
SCFD1-201ENST00000311943 C1orf74Q96LT6 269 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 SPON2Q9BUD6 331 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 MUC3BQ9H195 1237 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 DEF6Q9H4E7 631 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 DHX35Q9H5Z1 703 aaKnown RBP12.37□□□□□ -0.43
SCFD1-201ENST00000311943 PARD6AQ9NPB6 346 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 RXFP3Q9NSD7 469 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 VPS28Q9UK41 221 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 SMG5Q9UPR3 1016 aaKnown RBP12.37□□□□□ -0.43
SCFD1-201ENST00000311943 PCDHGA2Q9Y5H1 932 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 BZW2Q9Y6E2 419 aaKnown RBP12.37□□□□□ -0.43
SCFD1-201ENST00000311943 RHOCP08134 193 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 GOT1P17174 413 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 CDH4P55283 916 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 SEMA3BQ13214 749 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 MAP7D1Q3KQU3 841 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 PPP6R3Q5H9R7 873 aaPredicted RBP12.37□□□□□ -0.43
SCFD1-201ENST00000311943 RAD9BQ6WBX8 426 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 CAMKK1Q8N5S9 505 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 HSPH1Q92598 858 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 MRFAP1L1Q96HT8 127 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 ZYG11BQ9C0D3 744 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 DUSP15Q9H1R2 295 aaPredicted RBP12.37□□□□□ -0.43
SCFD1-201ENST00000311943 TNKS2Q9H2K2 1166 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 FSCN3Q9NQT6 498 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 ETNK2Q9NVF9 386 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 VPS51Q9UID3 782 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 SALL4Q9UJQ4 1053 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 PLA2G4CQ9UP65 541 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 AP4E1Q9UPM8 1137 aa12.37□□□□□ -0.43
SCFD1-201ENST00000311943 REXO2Q9Y3B8 237 aaKnown RBP12.37□□□□□ -0.43
SCFD1-201ENST00000311943 ATXN2Q99700 1313 aaKnown RBP12.37□□□□□ -0.43
SCFD1-201ENST00000311943 PTPRZ1P23471 2315 aaPredicted RBP12.36□□□□□ -0.43
SCFD1-201ENST00000311943 CKAP5Q14008 2032 aa12.36□□□□□ -0.43
SCFD1-201ENST00000311943 TYW5A2RUC4 315 aaKnown RBP12.36□□□□□ -0.43
SCFD1-201ENST00000311943 CBX4O00257 560 aa12.36□□□□□ -0.43
SCFD1-201ENST00000311943 MAOBP27338 520 aa12.36□□□□□ -0.43
SCFD1-201ENST00000311943 EPHB2P29323 1055 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms