RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 PPM1JQ5JR12 505 aa16.79■□□□□ 0.28
LSM1-201ENST00000311351 RNF219Q5W0B1 726 aaPredicted RBP16.79■□□□□ 0.28
LSM1-201ENST00000311351 ZNF776Q68DI1 518 aaPredicted RBP16.79■□□□□ 0.28
LSM1-201ENST00000311351 ZNF683Q8IZ20 524 aa16.79■□□□□ 0.28
LSM1-201ENST00000311351 RGL4Q8IZJ4 473 aa16.79■□□□□ 0.28
LSM1-201ENST00000311351 BAP1Q92560 729 aa16.79■□□□□ 0.28
LSM1-201ENST00000311351 ALG14Q96F25 216 aa16.79■□□□□ 0.28
LSM1-201ENST00000311351 NUSAP1Q9BXS6 441 aaKnown RBP16.79■□□□□ 0.28
LSM1-201ENST00000311351 FBRSQ9HAH7 460 aa16.79■□□□□ 0.28
LSM1-201ENST00000311351 SUN2Q9UH99 717 aa16.79■□□□□ 0.28
LSM1-201ENST00000311351 CDX4O14627 284 aaPredicted RBP16.78■□□□□ 0.28
LSM1-201ENST00000311351 TM4SF5O14894 197 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 DNTTP04053 509 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 SRPRAP08240 638 aaKnown RBP16.78■□□□□ 0.28
LSM1-201ENST00000311351 VAV1P15498 845 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 ENGP17813 658 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 OXTRP30559 389 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 ACSL1P33121 698 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 HOXD12P35452 270 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 DPP6P42658 865 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 SLC12A1Q13621 1099 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 DUOXA1Q1HG43 343 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 C9orf64Q5T6V5 341 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 SH3PXD2AQ5TCZ1 1133 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 SLC23A3Q6PIS1 610 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 MON1BQ7L1V2 547 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 ARCQ7LC44 396 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 KDM1BQ8NB78 822 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 RXFP2Q8WXD0 754 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 FOXJ1Q92949 421 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 NAP1L5Q96NT1 182 aaPredicted RBP16.78■□□□□ 0.28
LSM1-201ENST00000311351 AGPAT1Q99943 283 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 RSPH9Q9H1X1 276 aaPredicted RBP16.78■□□□□ 0.28
LSM1-201ENST00000311351 TMEM9BQ9NQ34 198 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 MPP6Q9NZW5 540 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 ADAM22Q9P0K1 906 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 PAXBP1Q9Y5B6 917 aa16.78■□□□□ 0.28
LSM1-201ENST00000311351 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.77■□□□□ 0.28
LSM1-201ENST00000311351 A0A1B0GTH6 734 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 EDDM13A0A1B0GTR0 161 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 C2CD4BA6NLJ0 364 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 LRRC53A6NM62 1247 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 E9PAM4 449 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 CLDN11O75508 207 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 C7P10643 843 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 FERP16591 822 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 SDC4P31431 198 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 PLK1P53350 603 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 CDH4P55283 916 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 ZNF177Q13360 481 aaPredicted RBP16.77■□□□□ 0.28
LSM1-201ENST00000311351 CCDC14Q49A88 953 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 TTC31Q49AM3 519 aaPredicted RBP16.77■□□□□ 0.28
LSM1-201ENST00000311351 ARTNQ5T4W7 220 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 DCAF12L1Q5VU92 463 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 E4F1Q66K89 784 aaPredicted RBP16.77■□□□□ 0.28
LSM1-201ENST00000311351 TFAP2DQ7Z6R9 452 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 PHF13Q86YI8 300 aaPredicted RBP16.77■□□□□ 0.28
LSM1-201ENST00000311351 ZCCHC9Q8N567 271 aaKnown RBP16.77■□□□□ 0.28
LSM1-201ENST00000311351 NUP58Q9BVL2 599 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 C6orf106Q9H6K1 298 aaPredicted RBP16.77■□□□□ 0.28
LSM1-201ENST00000311351 CBX8Q9HC52 389 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 CAPN10Q9HC96 672 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 SERGEFQ9UGK8 458 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 VPS28Q9UK41 221 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 OR51B4Q9Y5P0 310 aa16.77■□□□□ 0.28
LSM1-201ENST00000311351 MID1O15344 667 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 ENDOD1O94919 500 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 CALB1P05937 261 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 RHOCP08134 193 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 SERPINF2P08697 491 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 PSMD8P48556 350 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 OXCT1P55809 520 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 GSCP56915 257 aaPredicted RBP16.76■□□□□ 0.27
LSM1-201ENST00000311351 ZBTB16Q05516 673 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 ARID5BQ14865 1188 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 CST6Q15828 149 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 UAP1L1Q3KQV9 507 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 FILIP1LQ4L180 1135 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 WDR45BQ5MNZ6 344 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 SYCP2LQ5T4T6 812 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 IRF2BP2Q7Z5L9 587 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 LUZP1Q86V48 1076 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 MMAAQ8IVH4 418 aaKnown RBP16.76■□□□□ 0.27
LSM1-201ENST00000311351 STK40Q8N2I9 435 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 CADM4Q8NFZ8 388 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 OR2I1PQ8NGU4 316 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 CEP76Q8TAP6 659 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 SNX19Q92543 992 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 PTPRN2Q92932 1015 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 FEM1AQ9BSK4 669 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 SYT11Q9BT88 431 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 SELENOOQ9BVL4 669 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 GTPBP2Q9BX10 602 aaKnown RBP16.76■□□□□ 0.27
LSM1-201ENST00000311351 MUC3BQ9H195 1237 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 MIR1-1HGQ9H1L0 117 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 PABPC3Q9H361 631 aaKnown RBP16.76■□□□□ 0.27
LSM1-201ENST00000311351 TAS2R14Q9NYV8 317 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 SLC6A14Q9UN76 642 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 TBC1D30Q9Y2I9 924 aa16.76■□□□□ 0.27
LSM1-201ENST00000311351 SLCO1B1Q9Y6L6 691 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms