RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 NAT14Q8WUY8 206 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 PRCCQ92733 491 aaPredicted RBP6.54□□□□□ -1.36
VPS35-201ENST00000299138 PTCD3Q96EY7 689 aaKnown RBP6.54□□□□□ -1.36
VPS35-201ENST00000299138 SLITRK1Q96PX8 696 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 VAT1Q99536 393 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 EGFL8Q99944 293 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 TRMOQ9BU70 441 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 VTA1Q9NP79 307 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 DNAJC11Q9NVH1 559 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 PFDN2Q9UHV9 154 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 C2orf74A8MZ97 194 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 USP17L15C9J2P7 530 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 USP17L13C9JLJ4 530 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 USP17L11C9JVI0 530 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 USP17L18D6R9N7 530 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 USP17L22D6RA61 530 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 USP17L17D6RBQ6 530 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 USP17L19D6RCP7 530 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 USP17L20D6RJB6 530 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 MEIS2O14770 477 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 PRMT3O60678 531 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 SRP72O76094 671 aaKnown RBP6.53□□□□□ -1.36
VPS35-201ENST00000299138 MPOP05164 745 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 ASNSP08243 561 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 CDH5P33151 784 aaPredicted RBP6.53□□□□□ -1.36
VPS35-201ENST00000299138 RPS7P62081 194 aaKnown RBP6.53□□□□□ -1.36
VPS35-201ENST00000299138 NOMO3P69849 1222 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 USP17L24Q0WX57 530 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 TAB1Q15750 504 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 TATDN1Q6P1N9 297 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 USP17L6PQ6QN14 398 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 WDR49Q8IV35 697 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 ULK2Q8IYT8 1036 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 ANKRD13AQ8IZ07 590 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 TMEM168Q9H0V1 697 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 BFARQ9NZS9 450 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 COMMD9Q9P000 198 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 FBXO40Q9UH90 709 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 PCSK1NQ9UHG2 260 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 ZNHIT2Q9UHR6 403 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 COG5Q9UP83 839 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 FRMPD2Q68DX3 1309 aaPredicted RBP6.53□□□□□ -1.36
VPS35-201ENST00000299138 K7ERI5 159 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 PIK3R2O00459 728 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 SCAMP1O15126 338 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 PRPSAP2O60256 369 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 KATNA1O75449 491 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 IFNA14P01570 189 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 RBP3P10745 1247 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 MYL2P10916 166 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 BST2Q10589 180 aaKnown RBP6.53□□□□□ -1.36
VPS35-201ENST00000299138 STRIP1Q5VSL9 837 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 C1orf189Q5VU69 101 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 BNC2Q6ZN30 1099 aaPredicted RBP6.53□□□□□ -1.36
VPS35-201ENST00000299138 BRSK2Q8IWQ3 736 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 POMGNT2Q8NAT1 580 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 KYQ8NBH2 561 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 SLC4A11Q8NBS3 891 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 BORCS5Q969J3 196 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 ERVK-5Q9HDB9 667 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 CPSF3Q9UKF6 684 aaKnown RBP6.53□□□□□ -1.36
VPS35-201ENST00000299138 HUS1O60921 280 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 ATG7O95352 703 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 CFBP00751 764 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 ITGA2BP08514 1039 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 MMP8P22894 467 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 ADRA1DP25100 572 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 NFKBIAP25963 317 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 GTF2IP78347 998 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 CSTF3Q12996 717 aaKnown RBP6.53□□□□□ -1.36
VPS35-201ENST00000299138 NEDD8Q15843 81 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 PKN2Q16513 984 aaKnown RBP6.53□□□□□ -1.36
VPS35-201ENST00000299138 FUT11Q495W5 492 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 CRY2Q49AN0 593 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 THEMIS2Q5TEJ8 643 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 SMIM5Q71RC9 77 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 ZNF554Q86TJ5 538 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 PRPF39Q86UA1 669 aaKnown RBP6.53□□□□□ -1.36
VPS35-201ENST00000299138 CLVS1Q8IUQ0 354 aaPredicted RBP6.53□□□□□ -1.36
VPS35-201ENST00000299138 LRRC20Q8TCA0 184 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 HELQQ8TDG4 1101 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 TRPV5Q9NQA5 729 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 KLHL1Q9NR64 748 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 SIRPGQ9P1W8 387 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 KLHL3Q9UH77 587 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 ST14Q9Y5Y6 855 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 KPNA5O15131 536 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 AIF1P55008 147 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 PSMD5Q16401 504 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 C2CD6Q53TS8 623 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 INTS6LQ5JSJ4 861 aaKnown RBP6.53□□□□□ -1.36
VPS35-201ENST00000299138 IQSEC1Q6DN90 963 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 TTC8Q8TAM2 541 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 COPS4Q9BT78 406 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 RIBC2Q9H4K1 309 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 ZNF304Q9HCX3 659 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 TMEM138Q9NPI0 162 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 MCUBQ9NWR8 336 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 ATRNL1Q5VV63 1379 aa6.53□□□□□ -1.36
VPS35-201ENST00000299138 MYO1DO94832 1006 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms