RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 DYMQ7RTS9 669 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 FAM220AQ7Z4H9 259 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 KIF2BQ8N4N8 673 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 LSM14AQ8ND56 463 aaKnown RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PLBD2Q8NHP8 589 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 MMS19Q96T76 1030 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 CDC6Q99741 560 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 SENP6Q9GZR1 1112 aaPredicted RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 DDX47Q9H0S4 455 aaKnown RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 IL1RL2Q9HB29 575 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 CPNE5Q9HCH3 593 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ZFP57Q9NU63 452 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 SRP68Q9UHB9 627 aaKnown RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ATP7AQ04656 1500 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 FLT1P17948 1338 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ADAM10O14672 748 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 DYRK3O43781 588 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ERN1O75460 977 aaKnown RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ANPEPP15144 967 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 MAPK3P27361 379 aaPredicted RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ABATP80404 500 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 POU4F1Q01851 419 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PRKCQQ04759 706 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 HMGN3Q15651 99 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ZNF423Q2M1K9 1284 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 KIZQ2M2Z5 673 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 FOXR2Q6PJQ5 311 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 BAIAP2L2Q6UXY1 529 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 LINC00299Q6ZSB3 139 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 DNAJB8Q8NHS0 232 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 SLC9A6Q92581 669 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 GJA10Q969M2 543 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PAGE5Q96GU1 130 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 MED30Q96HR3 178 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 APOPT1Q96IL0 206 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ADI1Q9BV57 179 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 RC3H2Q9HBD1 1191 aaKnown RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ARMC1Q9NVT9 282 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 RCOR3Q9P2K3 495 aaPredicted RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 C6orf229H3BNL8 230 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 M0R2C6 588 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 NR5A2O00482 541 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 METTL18O95568 372 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 RPLP2P05387 115 aaKnown RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 TECP42680 631 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 FBXW4P57775 412 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ST3GAL1Q11201 340 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 TBCELQ5QJ74 424 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 GARNL3Q5VVW2 1013 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 MRNIPQ6NTE8 343 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 FBXW8Q8N3Y1 598 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 OR5T1Q8NG75 326 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ZNF671Q8TAW3 534 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 CPNE2Q96FN4 548 aaPredicted RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 FAM84AQ96KN4 292 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 RDH12Q96NR8 316 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 POU5F1BQ06416 359 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 HIST2H2ACQ16777 129 aaPredicted RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 HIST2H2AA3Q6FI13 130 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 TMC3Q7Z5M5 1100 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 AENQ8WTP8 325 aaKnown RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 TATDN2Q93075 761 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 RPRD1AQ96P16 312 aaPredicted RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PI4K2AQ9BTU6 479 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 TDRD1Q9BXT4 1180 aaKnown RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ARHGEF38Q9NXL2 777 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PNMA3Q9UL41 463 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 KCNE2Q9Y6J6 123 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ATE1O95260 518 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PABPC4LP0CB38 370 aaKnown RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 FDX1P10109 184 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PDHA2P29803 388 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 RGS1Q08116 209 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 DUOXA2Q1HG44 320 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ATCAYQ86WG3 371 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PNMA1Q8ND90 353 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 RIT1Q92963 219 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 DCAF5Q96JK2 942 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ZNF597Q96LX8 424 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 C2orf40Q9H1Z8 148 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 CUEDC1Q9NWM3 386 aaPredicted RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 HSPBP1Q9NZL4 362 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ZBTB21Q9ULJ3 1066 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PCDHB2Q9Y5E7 798 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 JAK2O60674 1132 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 CTPS1P17812 591 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 RBL1P28749 1068 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 MATKP42679 507 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ALDH1A3P47895 512 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 THOP1P52888 689 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 MLECQ14165 292 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 DEF8Q6ZN54 512 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 MTDHQ86UE4 582 aaKnown RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 EPHX4Q8IUS5 362 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 EPS8L3Q8TE67 593 aaKnown RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 VRK1Q99986 396 aaPredicted RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 MED10Q9BTT4 135 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ABCB10Q9NRK6 738 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 DNAAF2Q9NVR5 837 aaKnown RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 UBQLN2Q9UHD9 624 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms