RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 GORASP1Q9BQQ3 440 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 SLC13A1Q9BZW2 595 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 FBXO44Q9H4M3 255 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 ECT2Q9H8V3 914 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 ALG13Q9NP73 1137 aaKnown RBP13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 CASS4Q9NQ75 786 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 PCMTD2Q9NV79 361 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 DNAJB4Q9UDY4 337 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 VANGL2Q9ULK5 521 aa13.24□□□□□ -0.29
SPTLC1-201ENST00000262554 HMX2A2RU54 273 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 AP3B1O00203 1094 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 DFFAO00273 331 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 PSMD3O43242 534 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 MSI1O43347 362 aaKnown RBP13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 RASSF9O75901 435 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 SELPP16109 830 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 NFKB1P19838 968 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 CCNCP24863 283 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 HOXC13P31276 330 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 CD68P34810 354 aaPredicted RBP13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 CRHR1P34998 444 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 PACS1Q6VY07 963 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 CDHR3Q6ZTQ4 885 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 MON1AQ86VX9 555 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 UNC5BQ8IZJ1 945 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 NUP93Q8N1F7 819 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 ARHGAP18Q8N392 663 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 ACMSDQ8TDX5 336 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 C10orf82Q8WW14 230 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 FCRL2Q96LA5 508 aaPredicted RBP13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 C8orf48Q96LL4 319 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 TEKT5Q96M29 485 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 SERPINB11Q96P15 392 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 TSGA13Q96PP4 275 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 LRRC37BQ96QE4 947 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 NPHS2Q9NP85 383 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 ZFATQ9P243 1243 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 TXNDC16Q9P2K2 825 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 SCML2Q9UQR0 700 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 PCDHB5Q9Y5E4 795 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 RPS6KL1Q9Y6S9 549 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 KLF11O14901 512 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 HGSO14964 777 aaPredicted RBP13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 JCHAINP01591 159 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 BGNP21810 368 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 NPY2RP49146 381 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 PGFP49763 221 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 NCALDP61601 193 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 CTXN3Q4LDR2 81 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 VARS2Q5ST30 1063 aaKnown RBP13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 ATPAF2Q8N5M1 289 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 PTPRN2Q92932 1015 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 CERS2Q96G23 380 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 MLPHQ9BV36 600 aaPredicted RBP13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 TRIM55Q9BYV6 548 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 ELAC1Q9H777 363 aaKnown RBP13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 NMUR1Q9HB89 426 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 NEU3Q9UQ49 428 aa13.23□□□□□ -0.29
SPTLC1-201ENST00000262554 VWA8A3KMH1 1905 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 MAGEB16A2A368 324 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 USP12O75317 370 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 USP1O94782 785 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 IL1BP01584 269 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 SLC2A3P11169 496 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 MAGEA11P43364 429 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 SLC20A2Q08357 652 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 BFSP2Q13515 415 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 OLIG2Q13516 323 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 FRG1Q14331 258 aaKnown RBP13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 MANEALQ5VSG8 457 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 NAPEPLDQ6IQ20 393 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 LINC00523Q86TU6 105 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 CEP57Q86XR8 500 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 SLAIN1Q8ND83 568 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 ARMC2Q8NEN0 867 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 DPF3Q92784 378 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 ZNF669Q96BR6 464 aaPredicted RBP13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 KLC4Q9NSK0 619 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 TXLNGQ9NUQ3 528 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 ADAM28Q9UKQ2 775 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 PHF24Q9UPV7 400 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 PCDHB7Q9Y5E2 793 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 TTC3P53804 2025 aa13.22□□□□□ -0.29
SPTLC1-201ENST00000262554 OR6C75A6NL08 312 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 KCNU1A8MYU2 1149 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 C2CD2LO14523 706 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 ATP5HO75947 161 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 TGDSO95455 350 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 MOCS2O96007 188 aaPredicted RBP13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 ERVK-10P10266 1014 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 CCNB1P14635 433 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 DNAJB2P25686 324 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 HNRNPH1P31943 449 aaKnown RBP13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 SKIV2L2P42285 1042 aaKnown RBP13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 TUBP50607 506 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 PDE1BQ01064 536 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 NRG1Q02297 640 aaPredicted RBP13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 OVGP1Q12889 678 aa13.21□□□□□ -0.29
SPTLC1-201ENST00000262554 DDR2Q16832 855 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms