RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 WASHC4Q2M389 1173 aa6.15□□□□□ -1.43
SCN1A-218ENST00000640036 UNC13AQ9UPW8 1703 aa6.15□□□□□ -1.43
SCN1A-218ENST00000640036 KIF22Q14807 665 aa6.15□□□□□ -1.43
SCN1A-218ENST00000640036 AMOTQ4VCS5 1084 aa6.15□□□□□ -1.43
SCN1A-218ENST00000640036 TPRNQ4KMQ1 711 aa6.14□□□□□ -1.43
SCN1A-218ENST00000640036 TCIRG1Q13488 830 aa6.14□□□□□ -1.43
SCN1A-218ENST00000640036 ACSBG1Q96GR2 724 aa6.14□□□□□ -1.43
SCN1A-218ENST00000640036 ELL2O00472 640 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-218ENST00000640036 KANK4Q5T7N3 995 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-218ENST00000640036 ARHGAP27Q6ZUM4 889 aa6.14□□□□□ -1.43
SCN1A-218ENST00000640036 CRACR2BQ8N4Y2 399 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-218ENST00000640036 KIF14Q15058 1648 aa6.14□□□□□ -1.43
SCN1A-218ENST00000640036 IFIT2P09913 472 aaKnown RBP6.14□□□□□ -1.43
SCN1A-218ENST00000640036 HSP90AB4PQ58FF6 505 aa6.14□□□□□ -1.43
SCN1A-218ENST00000640036 C9orf84Q5VXU9 1444 aa6.14□□□□□ -1.43
SCN1A-218ENST00000640036 ZNF526Q8TF50 670 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-218ENST00000640036 GGNBP2Q9H3C7 697 aa6.14□□□□□ -1.43
SCN1A-218ENST00000640036 BICRAQ9NZM4 1560 aa6.13□□□□□ -1.43
SCN1A-218ENST00000640036 HMOX1P09601 288 aa6.13□□□□□ -1.43
SCN1A-218ENST00000640036 IBSPP21815 317 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-218ENST00000640036 CHMP4BP1P59074 171 aa6.13□□□□□ -1.43
SCN1A-218ENST00000640036 EAPPQ56P03 285 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-218ENST00000640036 NBPF6Q5VWK0 638 aa6.13□□□□□ -1.43
SCN1A-218ENST00000640036 NBPF5PQ86XG9 351 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-218ENST00000640036 NBPF4Q96M43 638 aa6.13□□□□□ -1.43
SCN1A-218ENST00000640036 PTMSP20962 102 aa6.13□□□□□ -1.43
SCN1A-218ENST00000640036 GJA3Q9Y6H8 435 aa6.13□□□□□ -1.43
SCN1A-218ENST00000640036 ZNF608Q9ULD9 1512 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-218ENST00000640036 CUL7Q14999 1698 aa6.13□□□□□ -1.43
SCN1A-218ENST00000640036 CFAP70Q5T0N1 1121 aa6.13□□□□□ -1.43
SCN1A-218ENST00000640036 KIF21BO75037 1637 aa6.13□□□□□ -1.43
SCN1A-218ENST00000640036 FCHSD2O94868 740 aa6.13□□□□□ -1.43
SCN1A-218ENST00000640036 CAVIN4Q5BKX8 364 aa6.13□□□□□ -1.43
SCN1A-218ENST00000640036 FEZ1Q99689 392 aa6.13□□□□□ -1.43
SCN1A-218ENST00000640036 CABP1Q9NZU7 370 aa6.13□□□□□ -1.43
SCN1A-218ENST00000640036 CHRNA2Q15822 529 aa6.13□□□□□ -1.43
SCN1A-218ENST00000640036 FAM98CQ17RN3 349 aaKnown RBP6.13□□□□□ -1.43
SCN1A-218ENST00000640036 CCDC30Q5VVM6 783 aa6.13□□□□□ -1.43
SCN1A-218ENST00000640036 ZNF287Q9HBT7 754 aa6.13□□□□□ -1.43
SCN1A-218ENST00000640036 BTG4Q9NY30 223 aa6.13□□□□□ -1.43
SCN1A-218ENST00000640036 FAM196AQ6ZSG2 479 aa6.12□□□□□ -1.43
SCN1A-218ENST00000640036 PPP1R42Q7Z4L9 355 aa6.12□□□□□ -1.43
SCN1A-218ENST00000640036 PPM1FP49593 454 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-218ENST00000640036 IDI1Q13907 227 aa6.12□□□□□ -1.43
SCN1A-218ENST00000640036 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.12□□□□□ -1.43
SCN1A-218ENST00000640036 EIF4G3O43432 1585 aaKnown RBP6.12□□□□□ -1.43
SCN1A-218ENST00000640036 TRIM21P19474 475 aaKnown RBP6.12□□□□□ -1.43
SCN1A-218ENST00000640036 WDR70Q9NW82 654 aa6.12□□□□□ -1.43
SCN1A-218ENST00000640036 SENP3-EIF4A1A0A087X0R7 540 aa6.12□□□□□ -1.43
SCN1A-218ENST00000640036 KCNA6P17658 529 aa6.12□□□□□ -1.43
SCN1A-218ENST00000640036 ATP6V1AP38606 617 aa6.12□□□□□ -1.43
SCN1A-218ENST00000640036 OTUD7BQ6GQQ9 843 aa6.12□□□□□ -1.43
SCN1A-218ENST00000640036 FBXO41Q8TF61 875 aa6.12□□□□□ -1.43
SCN1A-218ENST00000640036 L3MBTL2Q969R5 705 aa6.12□□□□□ -1.43
SCN1A-218ENST00000640036 BCS1LQ9Y276 419 aa6.12□□□□□ -1.43
SCN1A-218ENST00000640036 YEATS2Q9ULM3 1422 aa6.12□□□□□ -1.43
SCN1A-218ENST00000640036 ATAD2Q6PL18 1390 aa6.12□□□□□ -1.43
SCN1A-218ENST00000640036 TRIM29Q14134 588 aa6.12□□□□□ -1.43
SCN1A-218ENST00000640036 ERBINQ96RT1 1412 aa6.12□□□□□ -1.43
SCN1A-218ENST00000640036 USP47Q96K76 1375 aa6.12□□□□□ -1.43
SCN1A-218ENST00000640036 H0YIN7 160 aa6.12□□□□□ -1.43
SCN1A-218ENST00000640036 TRAPPC3LQ5T215 181 aa6.12□□□□□ -1.43
SCN1A-218ENST00000640036 CCDC47Q96A33 483 aaKnown RBP6.12□□□□□ -1.43
SCN1A-218ENST00000640036 PDE6BP35913 854 aa6.11□□□□□ -1.43
SCN1A-218ENST00000640036 ZCRB1Q8TBF4 217 aaKnown RBP6.11□□□□□ -1.43
SCN1A-218ENST00000640036 RUFY2Q8WXA3 655 aa6.11□□□□□ -1.43
SCN1A-218ENST00000640036 BTBD11A6QL63 1104 aa6.11□□□□□ -1.43
SCN1A-218ENST00000640036 GNAI1P63096 354 aa6.11□□□□□ -1.43
SCN1A-218ENST00000640036 RBM27Q9P2N5 1060 aaKnown RBP6.11□□□□□ -1.43
SCN1A-218ENST00000640036 ERICH3Q5RHP9 1530 aa6.11□□□□□ -1.43
SCN1A-218ENST00000640036 MYL6BP14649 208 aa6.11□□□□□ -1.43
SCN1A-218ENST00000640036 RIPK4P57078 832 aa6.11□□□□□ -1.43
SCN1A-218ENST00000640036 NYXQ9GZU5 481 aa6.11□□□□□ -1.43
SCN1A-218ENST00000640036 SART3Q15020 963 aaKnown RBP6.11□□□□□ -1.43
SCN1A-218ENST00000640036 PANK3Q9H999 370 aa6.11□□□□□ -1.43
SCN1A-218ENST00000640036 MTMR7Q9Y216 660 aa6.11□□□□□ -1.43
SCN1A-218ENST00000640036 WDR62O43379 1518 aa6.11□□□□□ -1.43
SCN1A-218ENST00000640036 H7C1D1 291 aa6.11□□□□□ -1.43
SCN1A-218ENST00000640036 CCDC158Q5M9N0 1113 aa6.11□□□□□ -1.43
SCN1A-218ENST00000640036 NFXL1Q6ZNB6 911 aa6.11□□□□□ -1.43
SCN1A-218ENST00000640036 CDC5LQ99459 802 aaKnown RBP6.11□□□□□ -1.43
SCN1A-218ENST00000640036 DNAI2Q9GZS0 605 aa6.11□□□□□ -1.43
SCN1A-218ENST00000640036 ZMYM3Q14202 1370 aa6.11□□□□□ -1.43
SCN1A-218ENST00000640036 ZC3H12CQ9C0D7 883 aaKnown RBP6.11□□□□□ -1.43
SCN1A-218ENST00000640036 EFCAB5A4FU69 1503 aa6.1□□□□□ -1.43
SCN1A-218ENST00000640036 ZNF518AQ6AHZ1 1483 aa6.1□□□□□ -1.43
SCN1A-218ENST00000640036 TNNI2P48788 182 aa6.1□□□□□ -1.43
SCN1A-218ENST00000640036 IFNL2Q8IZJ0 200 aa6.1□□□□□ -1.43
SCN1A-218ENST00000640036 HFM1A2PYH4 1435 aa6.1□□□□□ -1.43
SCN1A-218ENST00000640036 CA8P35219 290 aa6.1□□□□□ -1.43
SCN1A-218ENST00000640036 RBM6P78332 1123 aaKnown RBP6.1□□□□□ -1.43
SCN1A-218ENST00000640036 RALYLQ86SE5 291 aaKnown RBP6.1□□□□□ -1.43
SCN1A-218ENST00000640036 SPON1Q9HCB6 807 aa6.1□□□□□ -1.43
SCN1A-218ENST00000640036 HOOK2Q96ED9 719 aa6.1□□□□□ -1.43
SCN1A-218ENST00000640036 EYA3Q99504 573 aa6.1□□□□□ -1.43
SCN1A-218ENST00000640036 ABT1Q9ULW3 272 aaKnown RBP6.1□□□□□ -1.43
SCN1A-218ENST00000640036 RPRD2Q5VT52 1461 aaKnown RBP6.1□□□□□ -1.43
SCN1A-218ENST00000640036 MFAP1P55081 439 aaKnown RBP6.1□□□□□ -1.43
SCN1A-218ENST00000640036 SULT6B1Q6IMI4 303 aa6.1□□□□□ -1.43
SCN1A-218ENST00000640036 KRT27Q7Z3Y8 459 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms