RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 EIF3AQ14152 1382 aaKnown RBP22.1■■□□□ 1.13
SYNE2-228ENST00000639659 PRR36Q9H6K5 1346 aa22.09■■□□□ 1.13
SYNE2-228ENST00000639659 ACIN1Q9UKV3 1341 aaKnown RBP22.09■■□□□ 1.13
SYNE2-228ENST00000639659 TULP4Q9NRJ4 1543 aa22.09■■□□□ 1.13
SYNE2-228ENST00000639659 RAB3GAP2Q9H2M9 1393 aa22.09■■□□□ 1.13
SYNE2-228ENST00000639659 DCAF11Q8TEB1 546 aa22.07■■□□□ 1.12
SYNE2-228ENST00000639659 PRDM11Q9NQV5 511 aa22.06■■□□□ 1.12
SYNE2-228ENST00000639659 LRP5O75197 1615 aa22.06■■□□□ 1.12
SYNE2-228ENST00000639659 WASLO00401 505 aaPredicted RBP22.05■■□□□ 1.12
SYNE2-228ENST00000639659 EN1Q05925 392 aaPredicted RBP22.05■■□□□ 1.12
SYNE2-228ENST00000639659 RGPD1P0DJD0 1748 aa22.04■■□□□ 1.12
SYNE2-228ENST00000639659 CRYBG1Q9Y4K1 1723 aa22.03■■□□□ 1.12
SYNE2-228ENST00000639659 STRN4Q9NRL3 753 aa22.02■■□□□ 1.12
SYNE2-228ENST00000639659 SPATA31A5Q5VU36 1347 aa22.02■■□□□ 1.12
SYNE2-228ENST00000639659 SPATA31A7Q8IWB4 1347 aa22.02■■□□□ 1.12
SYNE2-228ENST00000639659 ITSN1Q15811 1721 aa22.01■■□□□ 1.11
SYNE2-228ENST00000639659 CHRNA2Q15822 529 aa22.01■■□□□ 1.11
SYNE2-228ENST00000639659 NUTM2GQ5VZR2 741 aa22.01■■□□□ 1.11
SYNE2-228ENST00000639659 HRCP23327 699 aa22■■□□□ 1.11
SYNE2-228ENST00000639659 ARHGEF28Q8N1W1 1705 aaKnown RBP22■■□□□ 1.11
SYNE2-228ENST00000639659 KIAA0232Q92628 1395 aa21.99■■□□□ 1.11
SYNE2-228ENST00000639659 THSD7AQ9UPZ6 1657 aa21.98■■□□□ 1.11
SYNE2-228ENST00000639659 R3HDM1Q15032 1099 aaKnown RBP21.98■■□□□ 1.11
SYNE2-228ENST00000639659 USP35Q9P2H5 1018 aa21.98■■□□□ 1.11
SYNE2-228ENST00000639659 PHRF1Q9P1Y6 1649 aaKnown RBP21.98■■□□□ 1.11
SYNE2-228ENST00000639659 ATP7BP35670 1465 aa21.97■■□□□ 1.11
SYNE2-228ENST00000639659 ZC3H6P61129 1189 aaKnown RBP21.97■■□□□ 1.11
SYNE2-228ENST00000639659 NUDT16Q96DE0 195 aaKnown RBP21.97■■□□□ 1.11
SYNE2-228ENST00000639659 TNS1Q9HBL0 1735 aaKnown RBP21.97■■□□□ 1.11
SYNE2-228ENST00000639659 EZH2Q15910 746 aaKnown RBP21.95■■□□□ 1.1
SYNE2-228ENST00000639659 TRIM37O94972 964 aa21.94■■□□□ 1.1
SYNE2-228ENST00000639659 SPATA31A1Q5TZJ5 1347 aa21.94■■□□□ 1.1
SYNE2-228ENST00000639659 EVA1CP58658 441 aa21.92■■□□□ 1.1
SYNE2-228ENST00000639659 CDK19Q9BWU1 502 aa21.92■■□□□ 1.1
SYNE2-228ENST00000639659 ACEP12821 1306 aa21.89■■□□□ 1.1
SYNE2-228ENST00000639659 APBA3O96018 575 aa21.89■■□□□ 1.09
SYNE2-228ENST00000639659 FAM196AQ6ZSG2 479 aa21.89■■□□□ 1.09
SYNE2-228ENST00000639659 DISP2A7MBM2 1401 aa21.89■■□□□ 1.09
SYNE2-228ENST00000639659 TOPAZ1Q8N9V7 1692 aa21.88■■□□□ 1.09
SYNE2-228ENST00000639659 ZBTB7CA1YPR0 619 aa21.87■■□□□ 1.09
SYNE2-228ENST00000639659 PDE3BQ13370 1112 aa21.87■■□□□ 1.09
SYNE2-228ENST00000639659 SSH2Q76I76 1423 aa21.87■■□□□ 1.09
SYNE2-228ENST00000639659 NRKQ7Z2Y5 1582 aa21.87■■□□□ 1.09
SYNE2-228ENST00000639659 ABTB2Q8N961 1025 aa21.86■■□□□ 1.09
SYNE2-228ENST00000639659 STAC3Q96MF2 364 aa21.86■■□□□ 1.09
SYNE2-228ENST00000639659 NBPF8Q3BBV2 869 aa21.85■■□□□ 1.09
SYNE2-228ENST00000639659 LARP1Q6PKG0 1096 aaKnown RBP21.85■■□□□ 1.09
SYNE2-228ENST00000639659 CAMKK2Q96RR4 588 aa21.84■■□□□ 1.09
SYNE2-228ENST00000639659 CCDC61Q9Y6R9 512 aa21.84■■□□□ 1.09
SYNE2-228ENST00000639659 SRPK2P78362 688 aaKnown RBP21.83■■□□□ 1.09
SYNE2-228ENST00000639659 POLR3AO14802 1390 aaPredicted RBP21.83■■□□□ 1.08
SYNE2-228ENST00000639659 CAMTA1Q9Y6Y1 1673 aa21.82■■□□□ 1.08
SYNE2-228ENST00000639659 TCP11L2Q8N4U5 519 aa21.81■■□□□ 1.08
SYNE2-228ENST00000639659 BARGINQ6ZT62 677 aa21.8■■□□□ 1.08
SYNE2-228ENST00000639659 PPIP5K1Q6PFW1 1433 aa21.8■■□□□ 1.08
SYNE2-228ENST00000639659 LMO7Q8WWI1 1683 aa21.79■■□□□ 1.08
SYNE2-228ENST00000639659 RREB1Q92766 1687 aa21.79■■□□□ 1.08
SYNE2-228ENST00000639659 NUP188Q5SRE5 1749 aa21.78■■□□□ 1.08
SYNE2-228ENST00000639659 PARD3Q8TEW0 1356 aa21.78■■□□□ 1.08
SYNE2-228ENST00000639659 PLEKHG3A1L390 1219 aa21.78■■□□□ 1.08
SYNE2-228ENST00000639659 NBPF1Q3BBV0 1214 aa21.78■■□□□ 1.08
SYNE2-228ENST00000639659 CABP2Q9NPB3 220 aa21.78■■□□□ 1.08
SYNE2-228ENST00000639659 KIAA1210Q9ULL0 1709 aa21.77■■□□□ 1.08
SYNE2-228ENST00000639659 NBPF14Q5TI25 921 aa21.77■■□□□ 1.08
SYNE2-228ENST00000639659 NLRP13Q86W25 1043 aa21.77■■□□□ 1.08
SYNE2-228ENST00000639659 USP19O94966 1318 aa21.77■■□□□ 1.07
SYNE2-228ENST00000639659 CPDO75976 1380 aa21.75■■□□□ 1.07
SYNE2-228ENST00000639659 GCP02774 474 aa21.75■■□□□ 1.07
SYNE2-228ENST00000639659 CENPJQ9HC77 1338 aaPredicted RBP21.75■■□□□ 1.07
SYNE2-228ENST00000639659 COL5A2P05997 1499 aaPredicted RBP21.74■■□□□ 1.07
SYNE2-228ENST00000639659 QRICH2Q9H0J4 1663 aa21.73■■□□□ 1.07
SYNE2-228ENST00000639659 PPP1R1BQ9UD71 204 aaPredicted RBP21.73■■□□□ 1.07
SYNE2-228ENST00000639659 PARP4Q9UKK3 1724 aaKnown RBP21.72■■□□□ 1.07
SYNE2-228ENST00000639659 NLRP6P59044 892 aa21.71■■□□□ 1.07
SYNE2-228ENST00000639659 THRAP3Q9Y2W1 955 aaKnown RBP21.71■■□□□ 1.07
SYNE2-228ENST00000639659 CRB1P82279 1406 aa21.7■■□□□ 1.06
SYNE2-228ENST00000639659 CABP1Q9NZU7 370 aa21.69■■□□□ 1.06
SYNE2-228ENST00000639659 TOM1L2Q6ZVM7 507 aa21.68■■□□□ 1.06
SYNE2-228ENST00000639659 OVOS2A0A0G2JMS6 1433 aa21.68■■□□□ 1.06
SYNE2-228ENST00000639659 OVOS2A0A0J9YW53 1432 aa21.68■■□□□ 1.06
SYNE2-228ENST00000639659 OVOS2Q6IE36 1432 aa21.68■■□□□ 1.06
SYNE2-228ENST00000639659 LRRC37A3O60309 1634 aa21.68■■□□□ 1.06
SYNE2-228ENST00000639659 USP6P35125 1406 aa21.67■■□□□ 1.06
SYNE2-228ENST00000639659 SOX12O15370 315 aa21.67■■□□□ 1.06
SYNE2-228ENST00000639659 DDB1Q16531 1140 aa21.66■■□□□ 1.06
SYNE2-228ENST00000639659 SPON1Q9HCB6 807 aa21.66■■□□□ 1.06
SYNE2-228ENST00000639659 YY1P25490 414 aa21.65■■□□□ 1.06
SYNE2-228ENST00000639659 AATKQ6ZMQ8 1374 aa21.63■■□□□ 1.05
SYNE2-228ENST00000639659 PIK3C2AO00443 1686 aa21.63■■□□□ 1.05
SYNE2-228ENST00000639659 SLIT3O75094 1523 aa21.63■■□□□ 1.05
SYNE2-228ENST00000639659 PEAK1Q9H792 1746 aa21.63■■□□□ 1.05
SYNE2-228ENST00000639659 BRD4O60885 1362 aaPredicted RBP21.62■■□□□ 1.05
SYNE2-228ENST00000639659 SBF2Q86WG5 1849 aa21.62■■□□□ 1.05
SYNE2-228ENST00000639659 KCNQ2O43526 872 aa21.62■■□□□ 1.05
SYNE2-228ENST00000639659 CSB-PGBD3P0DP91 1061 aa21.62■■□□□ 1.05
SYNE2-228ENST00000639659 WNK3Q9BYP7 1800 aa21.62■■□□□ 1.05
SYNE2-228ENST00000639659 DCAF8L1A6NGE4 600 aa21.61■■□□□ 1.05
SYNE2-228ENST00000639659 C11orf95C9JLR9 678 aaPredicted RBP21.61■■□□□ 1.05
SYNE2-228ENST00000639659 PTF1AQ7RTS3 328 aa21.6■■□□□ 1.05
SYNE2-228ENST00000639659 BCL11BQ9C0K0 894 aaPredicted RBP21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms