RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 ERLIN2O94905 339 aa7.32□□□□□ -1.24
SCN1A-217ENST00000637988 ANKIB1Q9P2G1 1089 aa7.32□□□□□ -1.24
SCN1A-217ENST00000637988 STIM1Q13586 685 aa7.32□□□□□ -1.24
SCN1A-217ENST00000637988 RFX1P22670 979 aa7.32□□□□□ -1.24
SCN1A-217ENST00000637988 GRIPAP1Q4V328 841 aa7.32□□□□□ -1.24
SCN1A-217ENST00000637988 SMARCA4P51532 1647 aa7.32□□□□□ -1.24
SCN1A-217ENST00000637988 GZF1Q9H116 711 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-217ENST00000637988 SYNJ2O15056 1496 aa7.32□□□□□ -1.24
SCN1A-217ENST00000637988 FOXD4L5Q5VV16 416 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-217ENST00000637988 FOXD4L4Q8WXT5 416 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-217ENST00000637988 HOMER2Q9NSB8 354 aa7.32□□□□□ -1.24
SCN1A-217ENST00000637988 SASS6Q6UVJ0 657 aa7.32□□□□□ -1.24
SCN1A-217ENST00000637988 CCDC73Q6ZRK6 1079 aa7.32□□□□□ -1.24
SCN1A-217ENST00000637988 CRACR2BQ8N4Y2 399 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-217ENST00000637988 PNISRQ8TF01 805 aaKnown RBP7.32□□□□□ -1.24
SCN1A-217ENST00000637988 VPS8Q8N3P4 1428 aa7.32□□□□□ -1.24
SCN1A-217ENST00000637988 ST20-MTHFSA0A0A6YYL1 179 aa7.32□□□□□ -1.24
SCN1A-217ENST00000637988 POLD1P28340 1107 aa7.32□□□□□ -1.24
SCN1A-217ENST00000637988 MTHFSP49914 203 aa7.32□□□□□ -1.24
SCN1A-217ENST00000637988 ACBD3Q9H3P7 528 aa7.32□□□□□ -1.24
SCN1A-217ENST00000637988 CLEC11AQ9Y240 323 aa7.32□□□□□ -1.24
SCN1A-217ENST00000637988 FHOD3Q2V2M9 1422 aa7.31□□□□□ -1.24
SCN1A-217ENST00000637988 NBPF8Q3BBV2 869 aa7.31□□□□□ -1.24
SCN1A-217ENST00000637988 NBPF14Q5TI25 921 aa7.31□□□□□ -1.24
SCN1A-217ENST00000637988 NEFHP12036 1026 aa7.31□□□□□ -1.24
SCN1A-217ENST00000637988 NF2P35240 595 aa7.31□□□□□ -1.24
SCN1A-217ENST00000637988 BMP2KQ9NSY1 1161 aaPredicted RBP7.31□□□□□ -1.24
SCN1A-217ENST00000637988 NOP2P46087 812 aaKnown RBP7.31□□□□□ -1.24
SCN1A-217ENST00000637988 GRM1Q13255 1194 aa7.31□□□□□ -1.24
SCN1A-217ENST00000637988 SMARCE1Q969G3 411 aa7.31□□□□□ -1.24
SCN1A-217ENST00000637988 TRIM22Q8IYM9 498 aa7.31□□□□□ -1.24
SCN1A-217ENST00000637988 VTI1AQ96AJ9 217 aa7.31□□□□□ -1.24
SCN1A-217ENST00000637988 SCAPERQ9BY12 1400 aa7.31□□□□□ -1.24
SCN1A-217ENST00000637988 PANK3Q9H999 370 aa7.31□□□□□ -1.24
SCN1A-217ENST00000637988 CCDC69A6NI79 296 aa7.3□□□□□ -1.24
SCN1A-217ENST00000637988 GBP2P32456 591 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-217ENST00000637988 BCL11BQ9C0K0 894 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-217ENST00000637988 CAGE1Q8TC20 777 aa7.3□□□□□ -1.24
SCN1A-217ENST00000637988 TOM1O60784 492 aa7.3□□□□□ -1.24
SCN1A-217ENST00000637988 LRSAM1Q6UWE0 723 aa7.3□□□□□ -1.24
SCN1A-217ENST00000637988 DNAJC2Q99543 621 aaKnown RBP7.3□□□□□ -1.24
SCN1A-217ENST00000637988 SMC3Q9UQE7 1217 aa7.3□□□□□ -1.24
SCN1A-217ENST00000637988 MYBBP1AQ9BQG0 1328 aaKnown RBP7.3□□□□□ -1.24
SCN1A-217ENST00000637988 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-217ENST00000637988 FILIP1LQ4L180 1135 aa7.3□□□□□ -1.24
SCN1A-217ENST00000637988 INTS3Q68E01 1043 aaKnown RBP7.3□□□□□ -1.24
SCN1A-217ENST00000637988 SEC63Q9UGP8 760 aaKnown RBP7.3□□□□□ -1.24
SCN1A-217ENST00000637988 CLASRPQ8N2M8 674 aaKnown RBP7.3□□□□□ -1.24
SCN1A-217ENST00000637988 GOLGA6L3A6NEY3 463 aa7.3□□□□□ -1.24
SCN1A-217ENST00000637988 FOXD4L1Q9NU39 408 aa7.3□□□□□ -1.24
SCN1A-217ENST00000637988 EZRP15311 586 aaKnown RBP7.29□□□□□ -1.24
SCN1A-217ENST00000637988 SKOR2Q2VWA4 1001 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-217ENST00000637988 CAVIN4Q5BKX8 364 aa7.29□□□□□ -1.24
SCN1A-217ENST00000637988 ZHX3Q9H4I2 956 aa7.29□□□□□ -1.24
SCN1A-217ENST00000637988 PABPN1LA6NDY0 278 aaKnown RBP7.29□□□□□ -1.24
SCN1A-217ENST00000637988 BICDL1Q6ZP65 573 aa7.29□□□□□ -1.24
SCN1A-217ENST00000637988 FSD1Q9BTV5 496 aa7.29□□□□□ -1.24
SCN1A-217ENST00000637988 ZNF692Q9BU19 519 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-217ENST00000637988 PLEKHH2Q8IVE3 1493 aa7.29□□□□□ -1.24
SCN1A-217ENST00000637988 PPP1R12BO60237 982 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-217ENST00000637988 ST5P78524 1137 aa7.29□□□□□ -1.24
SCN1A-217ENST00000637988 ATF7IPQ6VMQ6 1270 aa7.29□□□□□ -1.24
SCN1A-217ENST00000637988 CUL5Q93034 780 aa7.29□□□□□ -1.24
SCN1A-217ENST00000637988 BCL2L13Q9BXK5 485 aa7.29□□□□□ -1.24
SCN1A-217ENST00000637988 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-217ENST00000637988 TMOD3Q9NYL9 352 aa7.29□□□□□ -1.24
SCN1A-217ENST00000637988 ADAMTS2O95450 1211 aa7.29□□□□□ -1.24
SCN1A-217ENST00000637988 KIF7Q2M1P5 1343 aa7.29□□□□□ -1.24
SCN1A-217ENST00000637988 ANAPC15P60006 121 aa7.28□□□□□ -1.24
SCN1A-217ENST00000637988 TEX35Q5T0J7 233 aa7.28□□□□□ -1.24
SCN1A-217ENST00000637988 PLCD3Q8N3E9 789 aa7.28□□□□□ -1.24
SCN1A-217ENST00000637988 ZNHIT6Q9NWK9 470 aaKnown RBP7.28□□□□□ -1.24
SCN1A-217ENST00000637988 EPRSP07814 1512 aaKnown RBP7.28□□□□□ -1.24
SCN1A-217ENST00000637988 HMOX1P09601 288 aa7.28□□□□□ -1.24
SCN1A-217ENST00000637988 MROH2BQ7Z745 1585 aa7.28□□□□□ -1.24
SCN1A-217ENST00000637988 LMOD1P29536 600 aaPredicted RBP7.28□□□□□ -1.24
SCN1A-217ENST00000637988 FOSBP53539 338 aa7.28□□□□□ -1.24
SCN1A-217ENST00000637988 MYOM3Q5VTT5 1437 aa7.27□□□□□ -1.24
SCN1A-217ENST00000637988 RUNDC1Q96C34 613 aa7.27□□□□□ -1.25
SCN1A-217ENST00000637988 LRP2BPQ9P2M1 347 aa7.27□□□□□ -1.25
SCN1A-217ENST00000637988 GNAI3P08754 354 aa7.27□□□□□ -1.25
SCN1A-217ENST00000637988 JMYQ8N9B5 988 aa7.27□□□□□ -1.25
SCN1A-217ENST00000637988 KCNH5Q8NCM2 988 aa7.27□□□□□ -1.25
SCN1A-217ENST00000637988 CCDC112Q8NEF3 446 aa7.27□□□□□ -1.25
SCN1A-217ENST00000637988 ANKRD62A6NC57 917 aa7.27□□□□□ -1.25
SCN1A-217ENST00000637988 NOL7Q9UMY1 257 aaKnown RBP7.27□□□□□ -1.25
SCN1A-217ENST00000637988 VPS37CA5D8V6 355 aaPredicted RBP7.27□□□□□ -1.25
SCN1A-217ENST00000637988 FOXD4L6Q3SYB3 417 aaPredicted RBP7.27□□□□□ -1.25
SCN1A-217ENST00000637988 FOXD4L3Q6VB84 417 aaPredicted RBP7.27□□□□□ -1.25
SCN1A-217ENST00000637988 FEZ1Q99689 392 aa7.27□□□□□ -1.25
SCN1A-217ENST00000637988 RAB3GAP2Q9H2M9 1393 aa7.27□□□□□ -1.25
SCN1A-217ENST00000637988 TDO2P48775 406 aa7.27□□□□□ -1.25
SCN1A-217ENST00000637988 CALRP27797 417 aaKnown RBP7.26□□□□□ -1.25
SCN1A-217ENST00000637988 CETN2P41208 172 aa7.26□□□□□ -1.25
SCN1A-217ENST00000637988 USP5P45974 858 aa7.26□□□□□ -1.25
SCN1A-217ENST00000637988 CDKL5O76039 1030 aa7.26□□□□□ -1.25
SCN1A-217ENST00000637988 BIN2Q9UBW5 565 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-217ENST00000637988 RAI14Q9P0K7 980 aa7.26□□□□□ -1.25
SCN1A-217ENST00000637988 ZNF396Q96N95 335 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-217ENST00000637988 POLR3DP05423 398 aaPredicted RBP7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms