RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 PHF8Q9UPP1 1060 aa24.79■■□□□ 1.56
CLN3-254ENST00000637050 LRRC7Q96NW7 1537 aa24.79■■□□□ 1.56
CLN3-254ENST00000637050 TNNT2P45379 298 aaPredicted RBP24.78■■□□□ 1.56
CLN3-254ENST00000637050 NME9Q86XW9 330 aa24.78■■□□□ 1.56
CLN3-254ENST00000637050 XIRP1Q702N8 1843 aaKnown RBP24.78■■□□□ 1.56
CLN3-254ENST00000637050 TTC21AQ8NDW8 1320 aa24.76■■□□□ 1.55
CLN3-254ENST00000637050 C1orf167Q5SNV9 1468 aa24.75■■□□□ 1.55
CLN3-254ENST00000637050 SCAF1Q9H7N4 1312 aaKnown RBP24.75■■□□□ 1.55
CLN3-254ENST00000637050 ESCO1Q5FWF5 840 aa24.75■■□□□ 1.55
CLN3-254ENST00000637050 MSH6P52701 1360 aa24.74■■□□□ 1.55
CLN3-254ENST00000637050 ATF3P18847 181 aa24.74■■□□□ 1.55
CLN3-254ENST00000637050 MST1RQ04912 1400 aa24.74■■□□□ 1.55
CLN3-254ENST00000637050 INSRP06213 1382 aa24.73■■□□□ 1.55
CLN3-254ENST00000637050 MTHFSP49914 203 aa24.72■■□□□ 1.55
CLN3-254ENST00000637050 ZRANB1Q9UGI0 708 aa24.72■■□□□ 1.55
CLN3-254ENST00000637050 HNRNPUQ00839 825 aaKnown RBP eCLIP24.72■■□□□ 1.55
CLN3-254ENST00000637050 CADPS2Q86UW7 1296 aa24.72■■□□□ 1.55
CLN3-254ENST00000637050 COG3Q96JB2 828 aa24.72■■□□□ 1.55
CLN3-254ENST00000637050 ORAI2Q96SN7 254 aa24.71■■□□□ 1.55
CLN3-254ENST00000637050 OVOS2A0A0J9YW53 1432 aa24.7■■□□□ 1.54
CLN3-254ENST00000637050 OVOS2Q6IE36 1432 aa24.7■■□□□ 1.54
CLN3-254ENST00000637050 KIF1AQ12756 1690 aa24.69■■□□□ 1.54
CLN3-254ENST00000637050 AATKQ6ZMQ8 1374 aa24.68■■□□□ 1.54
CLN3-254ENST00000637050 USP31Q70CQ4 1352 aa24.68■■□□□ 1.54
CLN3-254ENST00000637050 PIK3C2AO00443 1686 aa24.67■■□□□ 1.54
CLN3-254ENST00000637050 CFAP53Q96M91 514 aa24.66■■□□□ 1.54
CLN3-254ENST00000637050 WDR43Q15061 677 aaKnown RBP eCLIP24.66■■□□□ 1.54
CLN3-254ENST00000637050 SHPRHQ149N8 1683 aa24.65■■□□□ 1.54
CLN3-254ENST00000637050 ADAMTS8Q9UP79 889 aa24.65■■□□□ 1.54
CLN3-254ENST00000637050 USP54Q70EL1 1684 aa24.64■■□□□ 1.54
CLN3-254ENST00000637050 BLMP54132 1417 aaPredicted RBP24.64■■□□□ 1.54
CLN3-254ENST00000637050 POLKQ9UBT6 870 aa24.64■■□□□ 1.53
CLN3-254ENST00000637050 SMG6Q86US8 1419 aaKnown RBP24.63■■□□□ 1.53
CLN3-254ENST00000637050 PSME1Q06323 249 aa24.63■■□□□ 1.53
CLN3-254ENST00000637050 PNPLA6Q8IY17 1366 aa24.63■■□□□ 1.53
CLN3-254ENST00000637050 COL3A1P02461 1466 aaPredicted RBP24.62■■□□□ 1.53
CLN3-254ENST00000637050 FOXO3O43524 673 aa24.62■■□□□ 1.53
CLN3-254ENST00000637050 MAP2P11137 1827 aaKnown RBP24.62■■□□□ 1.53
CLN3-254ENST00000637050 FBLN1P23142 703 aa24.61■■□□□ 1.53
CLN3-254ENST00000637050 ZBED9Q6R2W3 1325 aa24.6■■□□□ 1.53
CLN3-254ENST00000637050 MARF1Q9Y4F3 1742 aaKnown RBP24.59■■□□□ 1.53
CLN3-254ENST00000637050 PAK3O75914 559 aaPredicted RBP24.59■■□□□ 1.53
CLN3-254ENST00000637050 TRPM3Q9HCF6 1732 aaPredicted RBP24.58■■□□□ 1.53
CLN3-254ENST00000637050 ABTB2Q8N961 1025 aa24.58■■□□□ 1.53
CLN3-254ENST00000637050 NLRP6P59044 892 aa24.57■■□□□ 1.52
CLN3-254ENST00000637050 LTBP4Q8N2S1 1624 aa24.57■■□□□ 1.52
CLN3-254ENST00000637050 CDK12Q9NYV4 1490 aaPredicted RBP24.57■■□□□ 1.52
CLN3-254ENST00000637050 EMILIN1Q9Y6C2 1016 aa24.56■■□□□ 1.52
CLN3-254ENST00000637050 KRT28Q7Z3Y7 464 aa24.56■■□□□ 1.52
CLN3-254ENST00000637050 RRS1Q15050 365 aaKnown RBP24.54■■□□□ 1.52
CLN3-254ENST00000637050 SLAIN2Q9P270 581 aa24.54■■□□□ 1.52
CLN3-254ENST00000637050 PPM1GO15355 546 aaPredicted RBP24.53■■□□□ 1.52
CLN3-254ENST00000637050 XPCQ01831 940 aaPredicted RBP24.53■■□□□ 1.52
CLN3-254ENST00000637050 NPHP3Q7Z494 1330 aa24.52■■□□□ 1.52
CLN3-254ENST00000637050 DIAPH1O60610 1272 aaKnown RBP24.52■■□□□ 1.52
CLN3-254ENST00000637050 NUTM2GQ5VZR2 741 aa24.52■■□□□ 1.52
CLN3-254ENST00000637050 BRINP3Q76B58 766 aa24.52■■□□□ 1.52
CLN3-254ENST00000637050 NUDCQ9Y266 331 aa24.52■■□□□ 1.52
CLN3-254ENST00000637050 SBNO1A3KN83 1393 aa24.49■■□□□ 1.51
CLN3-254ENST00000637050 ALS2Q96Q42 1657 aa24.49■■□□□ 1.51
CLN3-254ENST00000637050 PEAK1Q9H792 1746 aa24.49■■□□□ 1.51
CLN3-254ENST00000637050 PXDNQ92626 1479 aa24.48■■□□□ 1.51
CLN3-254ENST00000637050 MAP3K19Q56UN5 1328 aa24.47■■□□□ 1.51
CLN3-254ENST00000637050 SOX12O15370 315 aa24.46■■□□□ 1.51
CLN3-254ENST00000637050 U2AF1L5P0DN76 240 aaPredicted RBP24.46■■□□□ 1.51
CLN3-254ENST00000637050 U2AF1Q01081 240 aaKnown RBP eCLIP24.46■■□□□ 1.51
CLN3-254ENST00000637050 DDX17Q92841 729 aaKnown RBP24.46■■□□□ 1.51
CLN3-254ENST00000637050 CCDC146Q8IYE0 955 aa24.46■■□□□ 1.51
CLN3-254ENST00000637050 SLIT3O75094 1523 aa24.45■■□□□ 1.5
CLN3-254ENST00000637050 NFAT5O94916 1531 aa24.45■■□□□ 1.5
CLN3-254ENST00000637050 KIF24Q5T7B8 1368 aa24.45■■□□□ 1.5
CLN3-254ENST00000637050 SENP3-EIF4A1A0A087X0R7 540 aa24.45■■□□□ 1.5
CLN3-254ENST00000637050 IL13P35225 146 aa24.45■■□□□ 1.5
CLN3-254ENST00000637050 USP19O94966 1318 aa24.44■■□□□ 1.5
CLN3-254ENST00000637050 U2SURPO15042 1029 aaKnown RBP24.44■■□□□ 1.5
CLN3-254ENST00000637050 AEBP2Q6ZN18 517 aaPredicted RBP24.44■■□□□ 1.5
CLN3-254ENST00000637050 FLT4P35916 1363 aa24.43■■□□□ 1.5
CLN3-254ENST00000637050 KCNH5Q8NCM2 988 aa24.43■■□□□ 1.5
CLN3-254ENST00000637050 RUNDC1Q96C34 613 aa24.43■■□□□ 1.5
CLN3-254ENST00000637050 TNS3Q68CZ2 1445 aa24.42■■□□□ 1.5
CLN3-254ENST00000637050 APAF1O14727 1248 aa24.4■■□□□ 1.5
CLN3-254ENST00000637050 LMOD2Q6P5Q4 547 aa24.4■■□□□ 1.5
CLN3-254ENST00000637050 SOS2Q07890 1332 aaPredicted RBP24.4■■□□□ 1.5
CLN3-254ENST00000637050 SPATA31A3Q5VYP0 1347 aa24.4■■□□□ 1.5
CLN3-254ENST00000637050 HSP90AB2PQ58FF8 381 aa24.4■■□□□ 1.5
CLN3-254ENST00000637050 IQSEC2Q5JU85 1478 aa24.39■■□□□ 1.5
CLN3-254ENST00000637050 AMPHP49418 695 aa24.39■■□□□ 1.49
CLN3-254ENST00000637050 NGEFQ8N5V2 710 aa24.39■■□□□ 1.49
CLN3-254ENST00000637050 SALL2Q9Y467 1007 aaPredicted RBP24.39■■□□□ 1.49
CLN3-254ENST00000637050 NHSL1Q5SYE7 1610 aa24.39■■□□□ 1.49
CLN3-254ENST00000637050 GCP02774 474 aa24.38■■□□□ 1.49
CLN3-254ENST00000637050 EIF4A2Q14240 407 aaKnown RBP24.38■■□□□ 1.49
CLN3-254ENST00000637050 PLEKHF1Q96S99 279 aa24.38■■□□□ 1.49
CLN3-254ENST00000637050 RTL1A6NKG5 1358 aa24.38■■□□□ 1.49
CLN3-254ENST00000637050 PHRF1Q9P1Y6 1649 aaKnown RBP24.37■■□□□ 1.49
CLN3-254ENST00000637050 FCHSD2O94868 740 aa24.37■■□□□ 1.49
CLN3-254ENST00000637050 MYT1Q01538 1121 aa24.37■■□□□ 1.49
CLN3-254ENST00000637050 MED1Q15648 1581 aaPredicted RBP24.37■■□□□ 1.49
CLN3-254ENST00000637050 LTN1O94822 1766 aa24.37■■□□□ 1.49
CLN3-254ENST00000637050 ARHGEF10O15013 1369 aa24.37■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms