RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 PRR36Q9H6K5 1346 aa23.04■■□□□ 1.28
PDLIM3-213ENST00000629667 PSDA5PKW4 1024 aaPredicted RBP23.03■■□□□ 1.28
PDLIM3-213ENST00000629667 PAK3O75914 559 aaPredicted RBP23.03■■□□□ 1.28
PDLIM3-213ENST00000629667 NGDNQ8NEJ9 315 aaKnown RBP23.03■■□□□ 1.28
PDLIM3-213ENST00000629667 WASLO00401 505 aaPredicted RBP23.02■■□□□ 1.28
PDLIM3-213ENST00000629667 KDM2AQ9Y2K7 1162 aa23.02■■□□□ 1.28
PDLIM3-213ENST00000629667 CRYBG1Q9Y4K1 1723 aa23.02■■□□□ 1.28
PDLIM3-213ENST00000629667 RAB3GAP2Q9H2M9 1393 aa23.01■■□□□ 1.27
PDLIM3-213ENST00000629667 DCAF11Q8TEB1 546 aa23■■□□□ 1.27
PDLIM3-213ENST00000629667 SPATA31A5Q5VU36 1347 aa23■■□□□ 1.27
PDLIM3-213ENST00000629667 SPATA31A7Q8IWB4 1347 aa23■■□□□ 1.27
PDLIM3-213ENST00000629667 ITSN1Q15811 1721 aa22.99■■□□□ 1.27
PDLIM3-213ENST00000629667 EN1Q05925 392 aaPredicted RBP22.99■■□□□ 1.27
PDLIM3-213ENST00000629667 FAM182BQ5T319 152 aa22.99■■□□□ 1.27
PDLIM3-213ENST00000629667 PRDM11Q9NQV5 511 aa22.99■■□□□ 1.27
PDLIM3-213ENST00000629667 HRCP23327 699 aa22.97■■□□□ 1.27
PDLIM3-213ENST00000629667 THSD7AQ9UPZ6 1657 aa22.97■■□□□ 1.27
PDLIM3-213ENST00000629667 ARHGEF28Q8N1W1 1705 aaKnown RBP22.95■■□□□ 1.26
PDLIM3-213ENST00000629667 STAC3Q96MF2 364 aa22.95■■□□□ 1.26
PDLIM3-213ENST00000629667 TNS1Q9HBL0 1735 aaKnown RBP22.94■■□□□ 1.26
PDLIM3-213ENST00000629667 PHRF1Q9P1Y6 1649 aaKnown RBP22.93■■□□□ 1.26
PDLIM3-213ENST00000629667 KIAA0232Q92628 1395 aa22.92■■□□□ 1.26
PDLIM3-213ENST00000629667 NUDT16Q96DE0 195 aaKnown RBP22.92■■□□□ 1.26
PDLIM3-213ENST00000629667 ATP7BP35670 1465 aa22.92■■□□□ 1.26
PDLIM3-213ENST00000629667 SPATA31A1Q5TZJ5 1347 aa22.91■■□□□ 1.26
PDLIM3-213ENST00000629667 R3HDM1Q15032 1099 aaKnown RBP22.91■■□□□ 1.26
PDLIM3-213ENST00000629667 CHRNA2Q15822 529 aa22.91■■□□□ 1.26
PDLIM3-213ENST00000629667 STRN4Q9NRL3 753 aa22.91■■□□□ 1.26
PDLIM3-213ENST00000629667 DISP2A7MBM2 1401 aa22.91■■□□□ 1.26
PDLIM3-213ENST00000629667 ZC3H6P61129 1189 aaKnown RBP22.88■■□□□ 1.25
PDLIM3-213ENST00000629667 EZH2Q15910 746 aaKnown RBP22.88■■□□□ 1.25
PDLIM3-213ENST00000629667 FAM196AQ6ZSG2 479 aa22.88■■□□□ 1.25
PDLIM3-213ENST00000629667 TRIM37O94972 964 aa22.87■■□□□ 1.25
PDLIM3-213ENST00000629667 NUTM2GQ5VZR2 741 aa22.87■■□□□ 1.25
PDLIM3-213ENST00000629667 EVA1CP58658 441 aa22.86■■□□□ 1.25
PDLIM3-213ENST00000629667 CDK19Q9BWU1 502 aa22.86■■□□□ 1.25
PDLIM3-213ENST00000629667 USP35Q9P2H5 1018 aa22.86■■□□□ 1.25
PDLIM3-213ENST00000629667 TOPAZ1Q8N9V7 1692 aa22.84■■□□□ 1.25
PDLIM3-213ENST00000629667 ACEP12821 1306 aa22.83■■□□□ 1.25
PDLIM3-213ENST00000629667 CAMKK2Q96RR4 588 aa22.83■■□□□ 1.25
PDLIM3-213ENST00000629667 CCDC61Q9Y6R9 512 aa22.83■■□□□ 1.25
PDLIM3-213ENST00000629667 POLR3AO14802 1390 aaPredicted RBP22.82■■□□□ 1.24
PDLIM3-213ENST00000629667 APBA3O96018 575 aa22.82■■□□□ 1.24
PDLIM3-213ENST00000629667 PDE3BQ13370 1112 aa22.82■■□□□ 1.24
PDLIM3-213ENST00000629667 NBPF8Q3BBV2 869 aa22.82■■□□□ 1.24
PDLIM3-213ENST00000629667 ABTB2Q8N961 1025 aa22.81■■□□□ 1.24
PDLIM3-213ENST00000629667 SSH2Q76I76 1423 aa22.81■■□□□ 1.24
PDLIM3-213ENST00000629667 PARD3Q8TEW0 1356 aa22.8■■□□□ 1.24
PDLIM3-213ENST00000629667 BARGINQ6ZT62 677 aa22.8■■□□□ 1.24
PDLIM3-213ENST00000629667 NRKQ7Z2Y5 1582 aa22.8■■□□□ 1.24
PDLIM3-213ENST00000629667 CAMTA1Q9Y6Y1 1673 aa22.78■■□□□ 1.24
PDLIM3-213ENST00000629667 PLEKHG3A1L390 1219 aa22.78■■□□□ 1.24
PDLIM3-213ENST00000629667 KIAA1210Q9ULL0 1709 aa22.78■■□□□ 1.24
PDLIM3-213ENST00000629667 LARP1Q6PKG0 1096 aaKnown RBP22.77■■□□□ 1.24
PDLIM3-213ENST00000629667 RREB1Q92766 1687 aa22.77■■□□□ 1.24
PDLIM3-213ENST00000629667 TCP11L2Q8N4U5 519 aa22.76■■□□□ 1.23
PDLIM3-213ENST00000629667 LMO7Q8WWI1 1683 aa22.76■■□□□ 1.23
PDLIM3-213ENST00000629667 CPDO75976 1380 aa22.75■■□□□ 1.23
PDLIM3-213ENST00000629667 NUP188Q5SRE5 1749 aa22.74■■□□□ 1.23
PDLIM3-213ENST00000629667 NLRP13Q86W25 1043 aa22.74■■□□□ 1.23
PDLIM3-213ENST00000629667 NBPF14Q5TI25 921 aa22.73■■□□□ 1.23
PDLIM3-213ENST00000629667 THRAP3Q9Y2W1 955 aaKnown RBP22.73■■□□□ 1.23
PDLIM3-213ENST00000629667 USP19O94966 1318 aa22.73■■□□□ 1.23
PDLIM3-213ENST00000629667 SRPK2P78362 688 aaKnown RBP22.72■■□□□ 1.23
PDLIM3-213ENST00000629667 GCP02774 474 aa22.71■■□□□ 1.23
PDLIM3-213ENST00000629667 PPIP5K1Q6PFW1 1433 aa22.71■■□□□ 1.23
PDLIM3-213ENST00000629667 PARP4Q9UKK3 1724 aaKnown RBP22.71■■□□□ 1.23
PDLIM3-213ENST00000629667 NBPF1Q3BBV0 1214 aa22.69■■□□□ 1.22
PDLIM3-213ENST00000629667 COL5A2P05997 1499 aaPredicted RBP22.68■■□□□ 1.22
PDLIM3-213ENST00000629667 ZBTB7CA1YPR0 619 aa22.67■■□□□ 1.22
PDLIM3-213ENST00000629667 C11orf95C9JLR9 678 aaPredicted RBP22.67■■□□□ 1.22
PDLIM3-213ENST00000629667 CABP2Q9NPB3 220 aa22.67■■□□□ 1.22
PDLIM3-213ENST00000629667 CENPJQ9HC77 1338 aaPredicted RBP22.66■■□□□ 1.22
PDLIM3-213ENST00000629667 CRB1P82279 1406 aa22.65■■□□□ 1.22
PDLIM3-213ENST00000629667 BRD4O60885 1362 aaPredicted RBP22.65■■□□□ 1.22
PDLIM3-213ENST00000629667 QRICH2Q9H0J4 1663 aa22.65■■□□□ 1.22
PDLIM3-213ENST00000629667 NLRP6P59044 892 aa22.63■■□□□ 1.21
PDLIM3-213ENST00000629667 PPP1R1BQ9UD71 204 aaPredicted RBP22.63■■□□□ 1.21
PDLIM3-213ENST00000629667 SBF2Q86WG5 1849 aa22.63■■□□□ 1.21
PDLIM3-213ENST00000629667 OVOS2A0A0G2JMS6 1433 aa22.63■■□□□ 1.21
PDLIM3-213ENST00000629667 OVOS2A0A0J9YW53 1432 aa22.63■■□□□ 1.21
PDLIM3-213ENST00000629667 OVOS2Q6IE36 1432 aa22.63■■□□□ 1.21
PDLIM3-213ENST00000629667 SPON1Q9HCB6 807 aa22.62■■□□□ 1.21
PDLIM3-213ENST00000629667 USP6P35125 1406 aa22.61■■□□□ 1.21
PDLIM3-213ENST00000629667 PEAK1Q9H792 1746 aa22.61■■□□□ 1.21
PDLIM3-213ENST00000629667 CABP1Q9NZU7 370 aa22.61■■□□□ 1.21
PDLIM3-213ENST00000629667 LRRC37A3O60309 1634 aa22.6■■□□□ 1.21
PDLIM3-213ENST00000629667 TOM1L2Q6ZVM7 507 aa22.6■■□□□ 1.21
PDLIM3-213ENST00000629667 RGPD3A6NKT7 1758 aaPredicted RBP22.6■■□□□ 1.21
PDLIM3-213ENST00000629667 RGPD4Q7Z3J3 1758 aa22.6■■□□□ 1.21
PDLIM3-213ENST00000629667 AATKQ6ZMQ8 1374 aa22.6■■□□□ 1.21
PDLIM3-213ENST00000629667 SLIT3O75094 1523 aa22.59■■□□□ 1.21
PDLIM3-213ENST00000629667 KCNQ2O43526 872 aa22.59■■□□□ 1.21
PDLIM3-213ENST00000629667 DDB1Q16531 1140 aa22.59■■□□□ 1.21
PDLIM3-213ENST00000629667 YY1P25490 414 aa22.58■■□□□ 1.21
PDLIM3-213ENST00000629667 PLSCR1O15162 318 aa22.57■■□□□ 1.2
PDLIM3-213ENST00000629667 WNK3Q9BYP7 1800 aa22.57■■□□□ 1.2
PDLIM3-213ENST00000629667 COL18A1P39060 1754 aa22.56■■□□□ 1.2
PDLIM3-213ENST00000629667 PIK3C2AO00443 1686 aa22.56■■□□□ 1.2
PDLIM3-213ENST00000629667 DCAF8L1A6NGE4 600 aa22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms