RNA–Protein interactions for RNA: ENST00000629088.1

PNKP-222, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-222ENST00000629088 A0A0G2JS52 829 aa23.03■■□□□ 1.28
PNKP-222ENST00000629088 MYT1Q01538 1121 aa23.03■■□□□ 1.28
PNKP-222ENST00000629088 FAM98CQ17RN3 349 aaKnown RBP23.03■■□□□ 1.28
PNKP-222ENST00000629088 ALS2Q96Q42 1657 aa23.01■■□□□ 1.27
PNKP-222ENST00000629088 ITSN1Q15811 1721 aa22.99■■□□□ 1.27
PNKP-222ENST00000629088 ATP7BP35670 1465 aa22.98■■□□□ 1.27
PNKP-222ENST00000629088 NGDNQ8NEJ9 315 aaKnown RBP22.98■■□□□ 1.27
PNKP-222ENST00000629088 PAK3O75914 559 aaPredicted RBP22.97■■□□□ 1.27
PNKP-222ENST00000629088 BAG6P46379 1132 aa22.96■■□□□ 1.27
PNKP-222ENST00000629088 SPATA31A5Q5VU36 1347 aa22.95■■□□□ 1.26
PNKP-222ENST00000629088 SPATA31A7Q8IWB4 1347 aa22.95■■□□□ 1.26
PNKP-222ENST00000629088 PSDA5PKW4 1024 aaPredicted RBP22.94■■□□□ 1.26
PNKP-222ENST00000629088 FAM182BQ5T319 152 aa22.94■■□□□ 1.26
PNKP-222ENST00000629088 NUDT16Q96DE0 195 aaKnown RBP22.94■■□□□ 1.26
PNKP-222ENST00000629088 NRAPQ86VF7 1730 aa22.94■■□□□ 1.26
PNKP-222ENST00000629088 COL14A1Q05707 1796 aaKnown RBP22.93■■□□□ 1.26
PNKP-222ENST00000629088 PRDM11Q9NQV5 511 aa22.92■■□□□ 1.26
PNKP-222ENST00000629088 CRYBG1Q9Y4K1 1723 aa22.91■■□□□ 1.26
PNKP-222ENST00000629088 EN1Q05925 392 aaPredicted RBP22.91■■□□□ 1.26
PNKP-222ENST00000629088 TOPAZ1Q8N9V7 1692 aa22.9■■□□□ 1.26
PNKP-222ENST00000629088 POLR3AO14802 1390 aaPredicted RBP22.9■■□□□ 1.26
PNKP-222ENST00000629088 CDK19Q9BWU1 502 aa22.9■■□□□ 1.26
PNKP-222ENST00000629088 CCDC61Q9Y6R9 512 aa22.89■■□□□ 1.25
PNKP-222ENST00000629088 CHRNA2Q15822 529 aa22.88■■□□□ 1.25
PNKP-222ENST00000629088 KIAA0232Q92628 1395 aa22.88■■□□□ 1.25
PNKP-222ENST00000629088 NBPF1Q3BBV0 1214 aa22.87■■□□□ 1.25
PNKP-222ENST00000629088 PLEKHG3A1L390 1219 aa22.86■■□□□ 1.25
PNKP-222ENST00000629088 NUTM2GQ5VZR2 741 aa22.86■■□□□ 1.25
PNKP-222ENST00000629088 SPATA31A1Q5TZJ5 1347 aa22.85■■□□□ 1.25
PNKP-222ENST00000629088 ZC3H6P61129 1189 aaKnown RBP22.85■■□□□ 1.25
PNKP-222ENST00000629088 STRN4Q9NRL3 753 aa22.84■■□□□ 1.25
PNKP-222ENST00000629088 ACEP12821 1306 aa22.83■■□□□ 1.25
PNKP-222ENST00000629088 CENPJQ9HC77 1338 aaPredicted RBP22.83■■□□□ 1.25
PNKP-222ENST00000629088 NBPF8Q3BBV2 869 aa22.83■■□□□ 1.25
PNKP-222ENST00000629088 LRP5O75197 1615 aa22.82■■□□□ 1.24
PNKP-222ENST00000629088 PHRF1Q9P1Y6 1649 aaKnown RBP22.82■■□□□ 1.24
PNKP-222ENST00000629088 THSD7AQ9UPZ6 1657 aa22.82■■□□□ 1.24
PNKP-222ENST00000629088 R3HDM1Q15032 1099 aaKnown RBP22.82■■□□□ 1.24
PNKP-222ENST00000629088 BRD4O60885 1362 aaPredicted RBP22.81■■□□□ 1.24
PNKP-222ENST00000629088 EZH2Q15910 746 aaKnown RBP22.8■■□□□ 1.24
PNKP-222ENST00000629088 L3MBTL2Q969R5 705 aa22.8■■□□□ 1.24
PNKP-222ENST00000629088 DISP2A7MBM2 1401 aa22.8■■□□□ 1.24
PNKP-222ENST00000629088 TRIM37O94972 964 aa22.79■■□□□ 1.24
PNKP-222ENST00000629088 SRPK2P78362 688 aaKnown RBP22.78■■□□□ 1.24
PNKP-222ENST00000629088 FAM196AQ6ZSG2 479 aa22.78■■□□□ 1.24
PNKP-222ENST00000629088 CAMKK2Q96RR4 588 aa22.78■■□□□ 1.24
PNKP-222ENST00000629088 USP35Q9P2H5 1018 aa22.78■■□□□ 1.24
PNKP-222ENST00000629088 QRICH2Q9H0J4 1663 aa22.77■■□□□ 1.24
PNKP-222ENST00000629088 RGPD1P0DJD0 1748 aa22.77■■□□□ 1.24
PNKP-222ENST00000629088 PPIP5K1Q6PFW1 1433 aa22.77■■□□□ 1.24
PNKP-222ENST00000629088 EVA1CP58658 441 aa22.77■■□□□ 1.24
PNKP-222ENST00000629088 TRPM1Q7Z4N2 1603 aa22.75■■□□□ 1.23
PNKP-222ENST00000629088 ABTB2Q8N961 1025 aa22.75■■□□□ 1.23
PNKP-222ENST00000629088 USP19O94966 1318 aa22.75■■□□□ 1.23
PNKP-222ENST00000629088 NRKQ7Z2Y5 1582 aa22.75■■□□□ 1.23
PNKP-222ENST00000629088 CPDO75976 1380 aa22.75■■□□□ 1.23
PNKP-222ENST00000629088 APBA3O96018 575 aa22.74■■□□□ 1.23
PNKP-222ENST00000629088 LARP1Q6PKG0 1096 aaKnown RBP22.74■■□□□ 1.23
PNKP-222ENST00000629088 BARGINQ6ZT62 677 aa22.74■■□□□ 1.23
PNKP-222ENST00000629088 SSH2Q76I76 1423 aa22.74■■□□□ 1.23
PNKP-222ENST00000629088 TNS1Q9HBL0 1735 aaKnown RBP22.72■■□□□ 1.23
PNKP-222ENST00000629088 PDE3BQ13370 1112 aa22.72■■□□□ 1.23
PNKP-222ENST00000629088 NLRP13Q86W25 1043 aa22.72■■□□□ 1.23
PNKP-222ENST00000629088 CABP2Q9NPB3 220 aa22.72■■□□□ 1.23
PNKP-222ENST00000629088 SIN3AQ96ST3 1273 aa22.71■■□□□ 1.23
PNKP-222ENST00000629088 CAMTA1Q9Y6Y1 1673 aa22.71■■□□□ 1.23
PNKP-222ENST00000629088 TCP11L2Q8N4U5 519 aa22.7■■□□□ 1.22
PNKP-222ENST00000629088 USP6P35125 1406 aa22.7■■□□□ 1.22
PNKP-222ENST00000629088 ROCK2O75116 1388 aaKnown RBP22.69■■□□□ 1.22
PNKP-222ENST00000629088 EVC2Q86UK5 1308 aa22.69■■□□□ 1.22
PNKP-222ENST00000629088 GCP02774 474 aa22.69■■□□□ 1.22
PNKP-222ENST00000629088 LMO7Q8WWI1 1683 aa22.68■■□□□ 1.22
PNKP-222ENST00000629088 PARD3Q8TEW0 1356 aa22.67■■□□□ 1.22
PNKP-222ENST00000629088 CABP1Q9NZU7 370 aa22.67■■□□□ 1.22
PNKP-222ENST00000629088 NEUROD1Q13562 356 aa22.65■■□□□ 1.22
PNKP-222ENST00000629088 THRAP3Q9Y2W1 955 aaKnown RBP22.65■■□□□ 1.22
PNKP-222ENST00000629088 SLIT3O75094 1523 aa22.63■■□□□ 1.21
PNKP-222ENST00000629088 ZNF692Q9BU19 519 aaPredicted RBP22.62■■□□□ 1.21
PNKP-222ENST00000629088 SBNO2Q9Y2G9 1366 aa22.62■■□□□ 1.21
PNKP-222ENST00000629088 ZBTB7CA1YPR0 619 aa22.61■■□□□ 1.21
PNKP-222ENST00000629088 COL5A2P05997 1499 aaPredicted RBP22.6■■□□□ 1.21
PNKP-222ENST00000629088 NLRP6P59044 892 aa22.6■■□□□ 1.21
PNKP-222ENST00000629088 NBPF14Q5TI25 921 aa22.6■■□□□ 1.21
PNKP-222ENST00000629088 AATKQ6ZMQ8 1374 aa22.59■■□□□ 1.21
PNKP-222ENST00000629088 PIK3C2AO00443 1686 aa22.58■■□□□ 1.2
PNKP-222ENST00000629088 CRB1P82279 1406 aa22.57■■□□□ 1.2
PNKP-222ENST00000629088 CPSF1Q10570 1443 aaKnown RBP22.57■■□□□ 1.2
PNKP-222ENST00000629088 TTC21AQ8NDW8 1320 aa22.57■■□□□ 1.2
PNKP-222ENST00000629088 AKAP12Q02952 1782 aa22.55■■□□□ 1.2
PNKP-222ENST00000629088 TTC21BQ7Z4L5 1316 aa22.55■■□□□ 1.2
PNKP-222ENST00000629088 C11orf95C9JLR9 678 aaPredicted RBP22.54■■□□□ 1.2
PNKP-222ENST00000629088 KCNH5Q8NCM2 988 aa22.54■■□□□ 1.2
PNKP-222ENST00000629088 RREB1Q92766 1687 aa22.54■■□□□ 1.2
PNKP-222ENST00000629088 PARP4Q9UKK3 1724 aaKnown RBP22.54■■□□□ 1.2
PNKP-222ENST00000629088 TOM1L2Q6ZVM7 507 aa22.53■■□□□ 1.2
PNKP-222ENST00000629088 AXIN2Q9Y2T1 843 aa22.53■■□□□ 1.2
PNKP-222ENST00000629088 NUP188Q5SRE5 1749 aa22.52■■□□□ 1.2
PNKP-222ENST00000629088 DDB1Q16531 1140 aa22.52■■□□□ 1.2
PNKP-222ENST00000629088 COL18A1P39060 1754 aa22.51■■□□□ 1.19
PNKP-222ENST00000629088 OVOS2A0A0G2JMS6 1433 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms