RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 ST20-MTHFSA0A0A6YYL1 179 aa20.67■□□□□ 0.9
PNKP-221ENST00000627317 QTRT2Q9H974 415 aaKnown RBP20.67■□□□□ 0.9
PNKP-221ENST00000627317 CABP2Q9NPB3 220 aa20.67■□□□□ 0.9
PNKP-221ENST00000627317 USP21Q9UK80 565 aa20.67■□□□□ 0.9
PNKP-221ENST00000627317 ACEP12821 1306 aa20.67■□□□□ 0.9
PNKP-221ENST00000627317 PPIP5K1Q6PFW1 1433 aa20.67■□□□□ 0.9
PNKP-221ENST00000627317 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.67■□□□□ 0.9
PNKP-221ENST00000627317 EIF4G2P78344 907 aaKnown RBP eCLIP20.66■□□□□ 0.9
PNKP-221ENST00000627317 RBM6P78332 1123 aaKnown RBP20.65■□□□□ 0.9
PNKP-221ENST00000627317 EVC2Q86UK5 1308 aa20.64■□□□□ 0.89
PNKP-221ENST00000627317 SRPK2P78362 688 aaKnown RBP20.64■□□□□ 0.89
PNKP-221ENST00000627317 LMOD2Q6P5Q4 547 aa20.63■□□□□ 0.89
PNKP-221ENST00000627317 TRPC5Q9UL62 973 aaPredicted RBP20.63■□□□□ 0.89
PNKP-221ENST00000627317 PLCH1Q4KWH8 1693 aa20.62■□□□□ 0.89
PNKP-221ENST00000627317 HSPA5P11021 654 aaKnown RBP20.62■□□□□ 0.89
PNKP-221ENST00000627317 SLC24A1O60721 1099 aa20.61■□□□□ 0.89
PNKP-221ENST00000627317 TESK2Q96S53 571 aa20.61■□□□□ 0.89
PNKP-221ENST00000627317 SSH2Q76I76 1423 aa20.61■□□□□ 0.89
PNKP-221ENST00000627317 NWD2Q9ULI1 1742 aa20.6■□□□□ 0.89
PNKP-221ENST00000627317 USP6P35125 1406 aa20.6■□□□□ 0.89
PNKP-221ENST00000627317 PHRF1Q9P1Y6 1649 aaKnown RBP20.6■□□□□ 0.89
PNKP-221ENST00000627317 GLI3P10071 1580 aa20.59■□□□□ 0.89
PNKP-221ENST00000627317 UNC5CLQ8IV45 518 aa20.59■□□□□ 0.89
PNKP-221ENST00000627317 BRD4O60885 1362 aaPredicted RBP20.59■□□□□ 0.89
PNKP-221ENST00000627317 PAK3O75914 559 aaPredicted RBP20.58■□□□□ 0.89
PNKP-221ENST00000627317 CABP1Q9NZU7 370 aa20.58■□□□□ 0.89
PNKP-221ENST00000627317 NRAPQ86VF7 1730 aa20.58■□□□□ 0.88
PNKP-221ENST00000627317 USP19O94966 1318 aa20.57■□□□□ 0.88
PNKP-221ENST00000627317 FAM83GA6ND36 823 aa20.57■□□□□ 0.88
PNKP-221ENST00000627317 HAP1P54257 671 aaPredicted RBP20.57■□□□□ 0.88
PNKP-221ENST00000627317 TMF1P82094 1093 aa20.57■□□□□ 0.88
PNKP-221ENST00000627317 NRKQ7Z2Y5 1582 aa20.57■□□□□ 0.88
PNKP-221ENST00000627317 PLEKHG5O94827 1062 aa20.56■□□□□ 0.88
PNKP-221ENST00000627317 COL14A1Q05707 1796 aaKnown RBP20.56■□□□□ 0.88
PNKP-221ENST00000627317 ATAD2Q6PL18 1390 aa20.56■□□□□ 0.88
PNKP-221ENST00000627317 CPSF1Q10570 1443 aaKnown RBP20.55■□□□□ 0.88
PNKP-221ENST00000627317 GJD4Q96KN9 370 aaPredicted RBP20.54■□□□□ 0.88
PNKP-221ENST00000627317 VPS72Q15906 364 aa20.53■□□□□ 0.88
PNKP-221ENST00000627317 EP400Q96L91 3159 aa20.53■□□□□ 0.88
PNKP-221ENST00000627317 PIK3C2AO00443 1686 aa20.52■□□□□ 0.88
PNKP-221ENST00000627317 CD163L1Q9NR16 1453 aa20.52■□□□□ 0.88
PNKP-221ENST00000627317 AKAP12Q02952 1782 aa20.51■□□□□ 0.87
PNKP-221ENST00000627317 KIAA0232Q92628 1395 aa20.51■□□□□ 0.87
PNKP-221ENST00000627317 CDCA8Q53HL2 280 aa20.51■□□□□ 0.87
PNKP-221ENST00000627317 NUTM2GQ5VZR2 741 aa20.51■□□□□ 0.87
PNKP-221ENST00000627317 SLIT3O75094 1523 aa20.51■□□□□ 0.87
PNKP-221ENST00000627317 ABTB2Q8N961 1025 aa20.5■□□□□ 0.87
PNKP-221ENST00000627317 UPF1Q92900 1129 aaKnown RBP eCLIP20.5■□□□□ 0.87
PNKP-221ENST00000627317 CPDO75976 1380 aa20.49■□□□□ 0.87
PNKP-221ENST00000627317 PUS7Q96PZ0 661 aaKnown RBP20.49■□□□□ 0.87
PNKP-221ENST00000627317 BTG4Q9NY30 223 aa20.48■□□□□ 0.87
PNKP-221ENST00000627317 LMO7Q8WWI1 1683 aa20.48■□□□□ 0.87
PNKP-221ENST00000627317 PRDM11Q9NQV5 511 aa20.47■□□□□ 0.87
PNKP-221ENST00000627317 MON2Q7Z3U7 1717 aa20.47■□□□□ 0.87
PNKP-221ENST00000627317 ONECUT3O60422 494 aaPredicted RBP20.46■□□□□ 0.87
PNKP-221ENST00000627317 POLR3GLQ9BT43 218 aa20.46■□□□□ 0.87
PNKP-221ENST00000627317 TMC1Q8TDI8 760 aa20.45■□□□□ 0.86
PNKP-221ENST00000627317 ZNF692Q9BU19 519 aaPredicted RBP20.45■□□□□ 0.86
PNKP-221ENST00000627317 TTC21BQ7Z4L5 1316 aa20.45■□□□□ 0.86
PNKP-221ENST00000627317 NLRP13Q86W25 1043 aa20.44■□□□□ 0.86
PNKP-221ENST00000627317 NINLQ9Y2I6 1382 aa20.44■□□□□ 0.86
PNKP-221ENST00000627317 CAMTA1Q9Y6Y1 1673 aa20.43■□□□□ 0.86
PNKP-221ENST00000627317 GCP02774 474 aa20.43■□□□□ 0.86
PNKP-221ENST00000627317 ZC3H6P61129 1189 aaKnown RBP20.43■□□□□ 0.86
PNKP-221ENST00000627317 CHRNA2Q15822 529 aa20.43■□□□□ 0.86
PNKP-221ENST00000627317 KTN1Q86UP2 1357 aaKnown RBP20.43■□□□□ 0.86
PNKP-221ENST00000627317 SPATA31A5Q5VU36 1347 aa20.42■□□□□ 0.86
PNKP-221ENST00000627317 SPATA31A7Q8IWB4 1347 aa20.42■□□□□ 0.86
PNKP-221ENST00000627317 TTC21AQ8NDW8 1320 aa20.42■□□□□ 0.86
PNKP-221ENST00000627317 USP54Q70EL1 1684 aa20.42■□□□□ 0.86
PNKP-221ENST00000627317 THSD7AQ9UPZ6 1657 aa20.41■□□□□ 0.86
PNKP-221ENST00000627317 A0A1W2PP64 1363 aa20.4■□□□□ 0.86
PNKP-221ENST00000627317 NFAT5O94916 1531 aa20.4■□□□□ 0.86
PNKP-221ENST00000627317 NLRP6P59044 892 aa20.4■□□□□ 0.86
PNKP-221ENST00000627317 SEPT12Q8IYM1 358 aa20.39■□□□□ 0.85
PNKP-221ENST00000627317 SLC12A5Q9H2X9 1139 aa20.39■□□□□ 0.85
PNKP-221ENST00000627317 MYOM1P52179 1685 aa20.38■□□□□ 0.85
PNKP-221ENST00000627317 EDC4Q6P2E9 1401 aaKnown RBP20.38■□□□□ 0.85
PNKP-221ENST00000627317 USP31Q70CQ4 1352 aa20.38■□□□□ 0.85
PNKP-221ENST00000627317 C11orf95C9JLR9 678 aaPredicted RBP20.38■□□□□ 0.85
PNKP-221ENST00000627317 HDGFL2Q7Z4V5 671 aaPredicted RBP20.38■□□□□ 0.85
PNKP-221ENST00000627317 TERF2IPQ9NYB0 399 aa20.38■□□□□ 0.85
PNKP-221ENST00000627317 COL5A2P05997 1499 aaPredicted RBP20.37■□□□□ 0.85
PNKP-221ENST00000627317 AATKQ6ZMQ8 1374 aa20.37■□□□□ 0.85
PNKP-221ENST00000627317 BRWD3Q6RI45 1802 aa20.37■□□□□ 0.85
PNKP-221ENST00000627317 KIF7Q2M1P5 1343 aa20.37■□□□□ 0.85
PNKP-221ENST00000627317 SPATA31A1Q5TZJ5 1347 aa20.37■□□□□ 0.85
PNKP-221ENST00000627317 CCDC9Q9Y3X0 531 aaKnown RBP20.37■□□□□ 0.85
PNKP-221ENST00000627317 COL18A1P39060 1754 aa20.36■□□□□ 0.85
PNKP-221ENST00000627317 CCDC7Q96M83 1385 aa20.35■□□□□ 0.85
PNKP-221ENST00000627317 FAM98CQ17RN3 349 aaKnown RBP20.35■□□□□ 0.85
PNKP-221ENST00000627317 ANKRD36BQ8N2N9 1353 aa20.34■□□□□ 0.85
PNKP-221ENST00000627317 OVOS2A0A0J9YW53 1432 aa20.33■□□□□ 0.84
PNKP-221ENST00000627317 OVOS2Q6IE36 1432 aa20.33■□□□□ 0.84
PNKP-221ENST00000627317 ABCC6O95255 1503 aa20.32■□□□□ 0.84
PNKP-221ENST00000627317 ARHGEF25Q86VW2 580 aa20.32■□□□□ 0.84
PNKP-221ENST00000627317 NME9Q86XW9 330 aa20.32■□□□□ 0.84
PNKP-221ENST00000627317 ZRANB1Q9UGI0 708 aa20.32■□□□□ 0.84
PNKP-221ENST00000627317 WASHC2AQ641Q2 1341 aa20.31■□□□□ 0.84
PNKP-221ENST00000627317 LARP1Q6PKG0 1096 aaKnown RBP20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms