RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 GLI3P10071 1580 aa21.21■□□□□ 0.99
LINC00643-205ENST00000623219 PPIP5K1Q6PFW1 1433 aa21.21■□□□□ 0.99
LINC00643-205ENST00000623219 LMOD2Q6P5Q4 547 aa21.2■□□□□ 0.98
LINC00643-205ENST00000623219 MON2Q7Z3U7 1717 aa21.2■□□□□ 0.98
LINC00643-205ENST00000623219 NRKQ7Z2Y5 1582 aa21.19■□□□□ 0.98
LINC00643-205ENST00000623219 HAP1P54257 671 aaPredicted RBP21.19■□□□□ 0.98
LINC00643-205ENST00000623219 CCDC61Q9Y6R9 512 aa21.19■□□□□ 0.98
LINC00643-205ENST00000623219 NBPF8Q3BBV2 869 aa21.18■□□□□ 0.98
LINC00643-205ENST00000623219 EP400Q96L91 3159 aa21.18■□□□□ 0.98
LINC00643-205ENST00000623219 SRPK2P78362 688 aaKnown RBP21.17■□□□□ 0.98
LINC00643-205ENST00000623219 PIK3C2AO00443 1686 aa21.16■□□□□ 0.98
LINC00643-205ENST00000623219 SBNO2Q9Y2G9 1366 aa21.16■□□□□ 0.98
LINC00643-205ENST00000623219 CABLES1Q8TDN4 633 aa21.16■□□□□ 0.98
LINC00643-205ENST00000623219 ACEP12821 1306 aa21.15■□□□□ 0.98
LINC00643-205ENST00000623219 PLEKHG3A1L390 1219 aa21.15■□□□□ 0.98
LINC00643-205ENST00000623219 EVC2Q86UK5 1308 aa21.14■□□□□ 0.97
LINC00643-205ENST00000623219 PAK3O75914 559 aaPredicted RBP21.14■□□□□ 0.97
LINC00643-205ENST00000623219 CABP2Q9NPB3 220 aa21.13■□□□□ 0.97
LINC00643-205ENST00000623219 UNC5CLQ8IV45 518 aa21.12■□□□□ 0.97
LINC00643-205ENST00000623219 BRD4O60885 1362 aaPredicted RBP21.11■□□□□ 0.97
LINC00643-205ENST00000623219 PLEKHG5O94827 1062 aa21.11■□□□□ 0.97
LINC00643-205ENST00000623219 USP54Q70EL1 1684 aa21.11■□□□□ 0.97
LINC00643-205ENST00000623219 LMO7Q8WWI1 1683 aa21.11■□□□□ 0.97
LINC00643-205ENST00000623219 USP6P35125 1406 aa21.11■□□□□ 0.97
LINC00643-205ENST00000623219 CARD11Q9BXL7 1154 aa21.1■□□□□ 0.97
LINC00643-205ENST00000623219 GJD4Q96KN9 370 aaPredicted RBP21.08■□□□□ 0.97
LINC00643-205ENST00000623219 ATAD2Q6PL18 1390 aa21.08■□□□□ 0.96
LINC00643-205ENST00000623219 SLIT3O75094 1523 aa21.06■□□□□ 0.96
LINC00643-205ENST00000623219 FAM83GA6ND36 823 aa21.05■□□□□ 0.96
LINC00643-205ENST00000623219 UPF1Q92900 1129 aaKnown RBP eCLIP21.05■□□□□ 0.96
LINC00643-205ENST00000623219 THSD7AQ9UPZ6 1657 aa21.05■□□□□ 0.96
LINC00643-205ENST00000623219 CLSPNQ9HAW4 1339 aa21.04■□□□□ 0.96
LINC00643-205ENST00000623219 WNK3Q9BYP7 1800 aa21.04■□□□□ 0.96
LINC00643-205ENST00000623219 VPS72Q15906 364 aa21.04■□□□□ 0.96
LINC00643-205ENST00000623219 RGPD5Q99666 1765 aa21.04■□□□□ 0.96
LINC00643-205ENST00000623219 SSH2Q76I76 1423 aa21.04■□□□□ 0.96
LINC00643-205ENST00000623219 USP19O94966 1318 aa21.04■□□□□ 0.96
LINC00643-205ENST00000623219 CABP1Q9NZU7 370 aa21.03■□□□□ 0.96
LINC00643-205ENST00000623219 KIAA0232Q92628 1395 aa21.02■□□□□ 0.96
LINC00643-205ENST00000623219 ABTB2Q8N961 1025 aa21.02■□□□□ 0.96
LINC00643-205ENST00000623219 LTN1O94822 1766 aa21.02■□□□□ 0.96
LINC00643-205ENST00000623219 COL18A1P39060 1754 aa21.01■□□□□ 0.95
LINC00643-205ENST00000623219 CPSF1Q10570 1443 aaKnown RBP21.01■□□□□ 0.95
LINC00643-205ENST00000623219 NUTM2GQ5VZR2 741 aa21■□□□□ 0.95
LINC00643-205ENST00000623219 PRDM11Q9NQV5 511 aa21■□□□□ 0.95
LINC00643-205ENST00000623219 BTG4Q9NY30 223 aa21■□□□□ 0.95
LINC00643-205ENST00000623219 CPDO75976 1380 aa20.99■□□□□ 0.95
LINC00643-205ENST00000623219 CD163L1Q9NR16 1453 aa20.98■□□□□ 0.95
LINC00643-205ENST00000623219 CAMTA1Q9Y6Y1 1673 aa20.97■□□□□ 0.95
LINC00643-205ENST00000623219 NLRP13Q86W25 1043 aa20.97■□□□□ 0.95
LINC00643-205ENST00000623219 PCGF6Q9BYE7 350 aa20.97■□□□□ 0.95
LINC00643-205ENST00000623219 CCDC9Q9Y3X0 531 aaKnown RBP20.97■□□□□ 0.95
LINC00643-205ENST00000623219 RGPD1P0DJD0 1748 aa20.96■□□□□ 0.95
LINC00643-205ENST00000623219 ZNF692Q9BU19 519 aaPredicted RBP20.96■□□□□ 0.95
LINC00643-205ENST00000623219 PARP4Q9UKK3 1724 aaKnown RBP20.95■□□□□ 0.94
LINC00643-205ENST00000623219 KTN1Q86UP2 1357 aaKnown RBP20.95■□□□□ 0.94
LINC00643-205ENST00000623219 MYOM1P52179 1685 aa20.94■□□□□ 0.94
LINC00643-205ENST00000623219 ZC3H6P61129 1189 aaKnown RBP20.94■□□□□ 0.94
LINC00643-205ENST00000623219 TIMELESSQ9UNS1 1208 aa20.94■□□□□ 0.94
LINC00643-205ENST00000623219 TTC21AQ8NDW8 1320 aa20.94■□□□□ 0.94
LINC00643-205ENST00000623219 NFAT5O94916 1531 aa20.94■□□□□ 0.94
LINC00643-205ENST00000623219 ABCC6O95255 1503 aa20.94■□□□□ 0.94
LINC00643-205ENST00000623219 KIF20BQ96Q89 1820 aa20.93■□□□□ 0.94
LINC00643-205ENST00000623219 ONECUT3O60422 494 aaPredicted RBP20.93■□□□□ 0.94
LINC00643-205ENST00000623219 CHRNA2Q15822 529 aa20.93■□□□□ 0.94
LINC00643-205ENST00000623219 USP47Q96K76 1375 aa20.93■□□□□ 0.94
LINC00643-205ENST00000623219 PUS7Q96PZ0 661 aaKnown RBP20.92■□□□□ 0.94
LINC00643-205ENST00000623219 SPATA31A5Q5VU36 1347 aa20.92■□□□□ 0.94
LINC00643-205ENST00000623219 SPATA31A7Q8IWB4 1347 aa20.92■□□□□ 0.94
LINC00643-205ENST00000623219 NINLQ9Y2I6 1382 aa20.92■□□□□ 0.94
LINC00643-205ENST00000623219 COL5A2P05997 1499 aaPredicted RBP20.92■□□□□ 0.94
LINC00643-205ENST00000623219 TNS1Q9HBL0 1735 aaKnown RBP20.92■□□□□ 0.94
LINC00643-205ENST00000623219 GCP02774 474 aa20.91■□□□□ 0.94
LINC00643-205ENST00000623219 TTC21BQ7Z4L5 1316 aa20.91■□□□□ 0.94
LINC00643-205ENST00000623219 SEPT12Q8IYM1 358 aa20.91■□□□□ 0.94
LINC00643-205ENST00000623219 TESK2Q96S53 571 aa20.91■□□□□ 0.94
LINC00643-205ENST00000623219 ST20-MTHFSA0A0A6YYL1 179 aa20.9■□□□□ 0.94
LINC00643-205ENST00000623219 SLC24A1O60721 1099 aa20.9■□□□□ 0.94
LINC00643-205ENST00000623219 NLRP6P59044 892 aa20.9■□□□□ 0.94
LINC00643-205ENST00000623219 EDC4Q6P2E9 1401 aaKnown RBP20.89■□□□□ 0.94
LINC00643-205ENST00000623219 SPATA31A1Q5TZJ5 1347 aa20.88■□□□□ 0.93
LINC00643-205ENST00000623219 FAM98CQ17RN3 349 aaKnown RBP20.88■□□□□ 0.93
LINC00643-205ENST00000623219 A0A1W2PP64 1363 aa20.87■□□□□ 0.93
LINC00643-205ENST00000623219 LRRC37A3O60309 1634 aa20.87■□□□□ 0.93
LINC00643-205ENST00000623219 FAM208AQ9UK61 1670 aaKnown RBP20.86■□□□□ 0.93
LINC00643-205ENST00000623219 AATKQ6ZMQ8 1374 aa20.86■□□□□ 0.93
LINC00643-205ENST00000623219 A0A0G2JS52 829 aa20.86■□□□□ 0.93
LINC00643-205ENST00000623219 MYT1Q01538 1121 aa20.86■□□□□ 0.93
LINC00643-205ENST00000623219 STRN4Q9NRL3 753 aa20.86■□□□□ 0.93
LINC00643-205ENST00000623219 BLMP54132 1417 aaPredicted RBP20.86■□□□□ 0.93
LINC00643-205ENST00000623219 HDGFL2Q7Z4V5 671 aaPredicted RBP20.85■□□□□ 0.93
LINC00643-205ENST00000623219 CCDC125Q86Z20 511 aa20.85■□□□□ 0.93
LINC00643-205ENST00000623219 TMC1Q8TDI8 760 aa20.85■□□□□ 0.93
LINC00643-205ENST00000623219 USP31Q70CQ4 1352 aa20.85■□□□□ 0.93
LINC00643-205ENST00000623219 SBF2Q86WG5 1849 aa20.84■□□□□ 0.93
LINC00643-205ENST00000623219 KRT27Q7Z3Y8 459 aa20.84■□□□□ 0.93
LINC00643-205ENST00000623219 KCNH5Q8NCM2 988 aa20.84■□□□□ 0.93
LINC00643-205ENST00000623219 TERF2IPQ9NYB0 399 aa20.83■□□□□ 0.93
LINC00643-205ENST00000623219 CRB1P82279 1406 aa20.83■□□□□ 0.93
LINC00643-205ENST00000623219 OVOS2A0A0J9YW53 1432 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms