RNA–Protein interactions for RNA: ENST00000622183.1

CPNE3-213, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 156 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-213ENST00000622183 COPS2P61201 443 aa9□□□□□ -0.97
CPNE3-213ENST00000622183 SEMA3FQ13275 785 aa9□□□□□ -0.97
CPNE3-213ENST00000622183 RETREG2Q8NC44 543 aa9□□□□□ -0.97
CPNE3-213ENST00000622183 UCN2Q96RP3 112 aa9□□□□□ -0.97
CPNE3-213ENST00000622183 PALM3A6NDB9 673 aaPredicted RBP8.99□□□□□ -0.97
CPNE3-213ENST00000622183 KCTD12Q96CX2 325 aaKnown RBP8.99□□□□□ -0.97
CPNE3-213ENST00000622183 EVA1BQ9NVM1 165 aa8.99□□□□□ -0.97
CPNE3-213ENST00000622183 CTHP32929 405 aa8.98□□□□□ -0.97
CPNE3-213ENST00000622183 SRPK2P78362 688 aaKnown RBP8.98□□□□□ -0.97
CPNE3-213ENST00000622183 NUDT12Q9BQG2 462 aa8.98□□□□□ -0.97
CPNE3-213ENST00000622183 ACIN1Q9UKV3 1341 aaKnown RBP8.98□□□□□ -0.97
CPNE3-213ENST00000622183 ZPR1O75312 459 aa8.97□□□□□ -0.97
CPNE3-213ENST00000622183 ADH1BP00325 375 aa8.97□□□□□ -0.97
CPNE3-213ENST00000622183 ARMC2Q8NEN0 867 aa8.97□□□□□ -0.97
CPNE3-213ENST00000622183 TFIP11Q9UBB9 837 aaKnown RBP8.97□□□□□ -0.97
CPNE3-213ENST00000622183 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.96□□□□□ -0.98
CPNE3-213ENST00000622183 RFX1P22670 979 aa8.96□□□□□ -0.98
CPNE3-213ENST00000622183 KCNH2Q12809 1159 aa8.96□□□□□ -0.98
CPNE3-213ENST00000622183 GPKOWQ92917 476 aaPredicted RBP eCLIP8.96□□□□□ -0.98
CPNE3-213ENST00000622183 PRDM9Q9NQV7 894 aa8.96□□□□□ -0.98
CPNE3-213ENST00000622183 GPSM3Q9Y4H4 160 aa8.96□□□□□ -0.98
CPNE3-213ENST00000622183 TLL1O43897 1013 aa8.95□□□□□ -0.98
CPNE3-213ENST00000622183 MTRQ99707 1265 aa8.95□□□□□ -0.98
CPNE3-213ENST00000622183 MAFBQ9Y5Q3 323 aaPredicted RBP8.95□□□□□ -0.98
CPNE3-213ENST00000622183 ZBTB7CA1YPR0 619 aa8.94□□□□□ -0.98
CPNE3-213ENST00000622183 POTEMA6NI47 508 aa8.94□□□□□ -0.98
CPNE3-213ENST00000622183 LMOD1P29536 600 aaPredicted RBP8.94□□□□□ -0.98
CPNE3-213ENST00000622183 PDE4CQ08493 712 aa8.94□□□□□ -0.98
CPNE3-213ENST00000622183 NBPF14Q5TI25 921 aa8.94□□□□□ -0.98
CPNE3-213ENST00000622183 PDXDC2PQ6P474 469 aa8.94□□□□□ -0.98
CPNE3-213ENST00000622183 TBC1D9Q6ZT07 1266 aa8.93□□□□□ -0.98
CPNE3-213ENST00000622183 KCTD17Q8N5Z5 321 aa8.93□□□□□ -0.98
CPNE3-213ENST00000622183 NFATC2IPQ8NCF5 419 aa8.93□□□□□ -0.98
CPNE3-213ENST00000622183 ATP9BO43861 1147 aa8.92□□□□□ -0.98
CPNE3-213ENST00000622183 PTK2Q05397 1052 aa8.92□□□□□ -0.98
CPNE3-213ENST00000622183 TJAP1Q5JTD0 557 aa8.92□□□□□ -0.98
CPNE3-213ENST00000622183 ZNF592Q92610 1267 aa8.92□□□□□ -0.98
CPNE3-213ENST00000622183 IL21Q9HBE4 155 aa8.92□□□□□ -0.98
CPNE3-213ENST00000622183 MYT1LQ9UL68 1186 aa8.92□□□□□ -0.98
CPNE3-213ENST00000622183 ZNF516Q92618 1163 aa8.9□□□□□ -0.98
CPNE3-213ENST00000622183 OCSTAMPQ9BR26 566 aa8.9□□□□□ -0.98
CPNE3-213ENST00000622183 USTQ9Y2C2 406 aa8.9□□□□□ -0.98
CPNE3-213ENST00000622183 ATG7O95352 703 aa8.89□□□□□ -0.99
CPNE3-213ENST00000622183 CSB-PGBD3P0DP91 1061 aa8.89□□□□□ -0.99
CPNE3-213ENST00000622183 PTPN5P54829 565 aa8.89□□□□□ -0.99
CPNE3-213ENST00000622183 MCCD1P59942 119 aaPredicted RBP8.89□□□□□ -0.99
CPNE3-213ENST00000622183 SLC6A16Q9GZN6 736 aa8.89□□□□□ -0.99
CPNE3-213ENST00000622183 UNC93B1Q9H1C4 597 aa8.89□□□□□ -0.99
CPNE3-213ENST00000622183 PIK3CDO00329 1044 aa8.88□□□□□ -0.99
CPNE3-213ENST00000622183 PTCRAQ6ISU1 281 aaPredicted RBP8.88□□□□□ -0.99
CPNE3-213ENST00000622183 SH3BP5LQ7L8J4 393 aa8.87□□□□□ -0.99
CPNE3-213ENST00000622183 CDAN1Q8IWY9 1227 aa8.87□□□□□ -0.99
CPNE3-213ENST00000622183 CCDC24Q8N4L8 307 aa8.87□□□□□ -0.99
CPNE3-213ENST00000622183 CEP126Q9P2H0 1117 aa8.87□□□□□ -0.99
CPNE3-213ENST00000622183 KANK4Q5T7N3 995 aaPredicted RBP8.86□□□□□ -0.99
CPNE3-213ENST00000622183 PLEKHM2Q8IWE5 1019 aa8.86□□□□□ -0.99
CPNE3-213ENST00000622183 ADAM32Q8TC27 787 aa8.86□□□□□ -0.99
CPNE3-213ENST00000622183 ARHGAP9Q9BRR9 750 aa8.86□□□□□ -0.99
CPNE3-213ENST00000622183 PCDHB9Q9Y5E1 797 aa8.86□□□□□ -0.99
CPNE3-213ENST00000622183 USP17L3A6NCW0 530 aa8.85□□□□□ -0.99
CPNE3-213ENST00000622183 USP17L4A6NCW7 530 aa8.85□□□□□ -0.99
CPNE3-213ENST00000622183 USP17L5A8MUK1 530 aa8.85□□□□□ -0.99
CPNE3-213ENST00000622183 USP17L2Q6R6M4 530 aa8.85□□□□□ -0.99
CPNE3-213ENST00000622183 USP17L1Q7RTZ2 530 aa8.85□□□□□ -0.99
CPNE3-213ENST00000622183 FAM174AQ8TBP5 190 aa8.85□□□□□ -0.99
CPNE3-213ENST00000622183 VRTNQ9H8Y1 702 aa8.85□□□□□ -0.99
CPNE3-213ENST00000622183 SKIP12755 728 aa8.84□□□□□ -0.99
CPNE3-213ENST00000622183 SLFNL1Q499Z3 407 aa8.84□□□□□ -0.99
CPNE3-213ENST00000622183 CDCA8Q53HL2 280 aa8.84□□□□□ -0.99
CPNE3-213ENST00000622183 AEBP1Q8IUX7 1158 aa8.84□□□□□ -0.99
CPNE3-213ENST00000622183 S1PR4O95977 384 aa8.83□□□□□ -1
CPNE3-213ENST00000622183 POTEGQ6S5H5 508 aa8.83□□□□□ -1
CPNE3-213ENST00000622183 SH3RF1Q7Z6J0 888 aa8.83□□□□□ -1
CPNE3-213ENST00000622183 ZBTB33Q86T24 672 aa8.83□□□□□ -1
CPNE3-213ENST00000622183 RNF135Q8IUD6 432 aa8.83□□□□□ -1
CPNE3-213ENST00000622183 PHTF2Q8N3S3 785 aa8.83□□□□□ -1
CPNE3-213ENST00000622183 NKX2-3Q8TAU0 364 aa8.83□□□□□ -1
CPNE3-213ENST00000622183 ELOAQ14241 798 aaKnown RBP8.82□□□□□ -1
CPNE3-213ENST00000622183 CHIC2Q9UKJ5 165 aa8.82□□□□□ -1
CPNE3-213ENST00000622183 FCF1Q9Y324 198 aaKnown RBP8.82□□□□□ -1
CPNE3-213ENST00000622183 BRD1O95696 1058 aa8.81□□□□□ -1
CPNE3-213ENST00000622183 BPHLQ86WA6 291 aaPredicted RBP8.81□□□□□ -1
CPNE3-213ENST00000622183 TMEM88BA6NKF7 163 aa8.8□□□□□ -1
CPNE3-213ENST00000622183 PATL2C9JE40 543 aaKnown RBP8.8□□□□□ -1
CPNE3-213ENST00000622183 LZTS3O60299 673 aaPredicted RBP8.8□□□□□ -1
CPNE3-213ENST00000622183 DZIP3Q86Y13 1208 aaKnown RBP8.8□□□□□ -1
CPNE3-213ENST00000622183 ZNF511Q8NB15 262 aa8.8□□□□□ -1
CPNE3-213ENST00000622183 PLPP7Q8NBV4 271 aa8.8□□□□□ -1
CPNE3-213ENST00000622183 BAP1Q92560 729 aa8.8□□□□□ -1
CPNE3-213ENST00000622183 CARD14Q9BXL6 1004 aa8.8□□□□□ -1
CPNE3-213ENST00000622183 MAGEB6P1A0A0J9YX57 407 aa8.79□□□□□ -1
CPNE3-213ENST00000622183 MAP7D1Q3KQU3 841 aa8.79□□□□□ -1
CPNE3-213ENST00000622183 DEPDC4Q8N2C3 294 aa8.79□□□□□ -1
CPNE3-213ENST00000622183 FAM196BA6NMK8 535 aa8.78□□□□□ -1
CPNE3-213ENST00000622183 KCNA1Q09470 495 aa8.78□□□□□ -1
CPNE3-213ENST00000622183 NCOA4Q13772 614 aa8.78□□□□□ -1
CPNE3-213ENST00000622183 LINC01559Q495D7 138 aa8.78□□□□□ -1
CPNE3-213ENST00000622183 ERFEQ4G0M1 354 aa8.78□□□□□ -1
CPNE3-213ENST00000622183 MKRN1Q9UHC7 482 aaKnown RBP8.78□□□□□ -1
CPNE3-213ENST00000622183 CCDC9Q9Y3X0 531 aaKnown RBP8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms