RNA–Protein interactions for RNA: ENST00000618056.4

PMS1-220, Transcript of PMS1 homolog 1, mismatch repair system component, humanhuman

TSL 5 BASIC

Gene PMS1, Length 1,468 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMS1-220ENST00000618056 CABP1Q9NZU7 370 aa35.21■■■■□ 3.23
PMS1-220ENST00000618056 HAP1P54257 671 aaPredicted RBP35.19■■■■□ 3.22
PMS1-220ENST00000618056 BRD4O60885 1362 aaPredicted RBP35.19■■■■□ 3.22
PMS1-220ENST00000618056 USP21Q9UK80 565 aa35.18■■■■□ 3.22
PMS1-220ENST00000618056 TNKS1BP1Q9C0C2 1729 aaKnown RBP35.18■■■■□ 3.22
PMS1-220ENST00000618056 AKAP12Q02952 1782 aa35.17■■■■□ 3.22
PMS1-220ENST00000618056 QTRT2Q9H974 415 aaKnown RBP35.16■■■■□ 3.22
PMS1-220ENST00000618056 BCL9LQ86UU0 1499 aa35.15■■■■□ 3.22
PMS1-220ENST00000618056 ST20-MTHFSA0A0A6YYL1 179 aa35.15■■■■□ 3.22
PMS1-220ENST00000618056 RXRBP28702 533 aa35.15■■■■□ 3.22
PMS1-220ENST00000618056 SLIT2O94813 1529 aa35.14■■■■□ 3.22
PMS1-220ENST00000618056 TESK2Q96S53 571 aa35.14■■■■□ 3.22
PMS1-220ENST00000618056 USP6P35125 1406 aa35.14■■■■□ 3.22
PMS1-220ENST00000618056 CDK12Q9NYV4 1490 aaPredicted RBP35.13■■■■□ 3.21
PMS1-220ENST00000618056 NWD2Q9ULI1 1742 aa35.13■■■■□ 3.21
PMS1-220ENST00000618056 USP47Q96K76 1375 aa35.12■■■■□ 3.21
PMS1-220ENST00000618056 PLCH1Q4KWH8 1693 aa35.12■■■■□ 3.21
PMS1-220ENST00000618056 SLC24A1O60721 1099 aa35.12■■■■□ 3.21
PMS1-220ENST00000618056 PLEKHG5O94827 1062 aa35.12■■■■□ 3.21
PMS1-220ENST00000618056 PHRF1Q9P1Y6 1649 aaKnown RBP35.12■■■■□ 3.21
PMS1-220ENST00000618056 PUS7Q96PZ0 661 aaKnown RBP35.11■■■■□ 3.21
PMS1-220ENST00000618056 TRPC5Q9UL62 973 aaPredicted RBP35.11■■■■□ 3.21
PMS1-220ENST00000618056 ATRNO75882 1429 aa35.11■■■■□ 3.21
PMS1-220ENST00000618056 RBM6P78332 1123 aaKnown RBP35.09■■■■□ 3.21
PMS1-220ENST00000618056 SSH2Q76I76 1423 aa35.08■■■■□ 3.21
PMS1-220ENST00000618056 ZNF692Q9BU19 519 aaPredicted RBP35.08■■■■□ 3.21
PMS1-220ENST00000618056 ABTB2Q8N961 1025 aa35.07■■■■□ 3.2
PMS1-220ENST00000618056 CPSF1Q10570 1443 aaKnown RBP35.07■■■■□ 3.2
PMS1-220ENST00000618056 COL14A1Q05707 1796 aaKnown RBP35.06■■■■□ 3.2
PMS1-220ENST00000618056 MON2Q7Z3U7 1717 aa35.05■■■■□ 3.2
PMS1-220ENST00000618056 UNC5CLQ8IV45 518 aa35.04■■■■□ 3.2
PMS1-220ENST00000618056 NRKQ7Z2Y5 1582 aa35.03■■■■□ 3.2
PMS1-220ENST00000618056 FAM83GA6ND36 823 aa35.03■■■■□ 3.2
PMS1-220ENST00000618056 NUTM2GQ5VZR2 741 aa35.03■■■■□ 3.2
PMS1-220ENST00000618056 USP19O94966 1318 aa35.02■■■■□ 3.2
PMS1-220ENST00000618056 PIK3C2AO00443 1686 aa35.01■■■■□ 3.2
PMS1-220ENST00000618056 NLRP13Q86W25 1043 aa35■■■■□ 3.19
PMS1-220ENST00000618056 NRAPQ86VF7 1730 aa34.99■■■■□ 3.19
PMS1-220ENST00000618056 CD163L1Q9NR16 1453 aa34.99■■■■□ 3.19
PMS1-220ENST00000618056 RGS12O14924 1447 aa34.97■■■■□ 3.19
PMS1-220ENST00000618056 KTN1Q86UP2 1357 aaKnown RBP34.97■■■■□ 3.19
PMS1-220ENST00000618056 TTC21BQ7Z4L5 1316 aa34.96■■■■□ 3.19
PMS1-220ENST00000618056 NINLQ9Y2I6 1382 aa34.96■■■■□ 3.19
PMS1-220ENST00000618056 TTC21AQ8NDW8 1320 aa34.95■■■■□ 3.19
PMS1-220ENST00000618056 TMC1Q8TDI8 760 aa34.95■■■■□ 3.19
PMS1-220ENST00000618056 GJD4Q96KN9 370 aaPredicted RBP34.95■■■■□ 3.19
PMS1-220ENST00000618056 TMF1P82094 1093 aa34.94■■■■□ 3.18
PMS1-220ENST00000618056 SLC12A5Q9H2X9 1139 aa34.94■■■■□ 3.18
PMS1-220ENST00000618056 PRDM11Q9NQV5 511 aa34.94■■■■□ 3.18
PMS1-220ENST00000618056 KIAA0232Q92628 1395 aa34.94■■■■□ 3.18
PMS1-220ENST00000618056 GLI3P10071 1580 aa34.92■■■■□ 3.18
PMS1-220ENST00000618056 SLIT3O75094 1523 aa34.92■■■■□ 3.18
PMS1-220ENST00000618056 NLRP6P59044 892 aa34.91■■■■□ 3.18
PMS1-220ENST00000618056 VPS72Q15906 364 aa34.91■■■■□ 3.18
PMS1-220ENST00000618056 BTG4Q9NY30 223 aa34.91■■■■□ 3.18
PMS1-220ENST00000618056 CPDO75976 1380 aa34.91■■■■□ 3.18
PMS1-220ENST00000618056 HDGFL2Q7Z4V5 671 aaPredicted RBP34.9■■■■□ 3.18
PMS1-220ENST00000618056 GCP02774 474 aa34.89■■■■□ 3.18
PMS1-220ENST00000618056 TERF2IPQ9NYB0 399 aa34.89■■■■□ 3.18
PMS1-220ENST00000618056 ZC3H6P61129 1189 aaKnown RBP34.88■■■■□ 3.17
PMS1-220ENST00000618056 A0A1W2PP64 1363 aa34.87■■■■□ 3.17
PMS1-220ENST00000618056 USP54Q70EL1 1684 aa34.87■■■■□ 3.17
PMS1-220ENST00000618056 EDC4Q6P2E9 1401 aaKnown RBP34.86■■■■□ 3.17
PMS1-220ENST00000618056 CDCA8Q53HL2 280 aa34.85■■■■□ 3.17
PMS1-220ENST00000618056 LMO7Q8WWI1 1683 aa34.85■■■■□ 3.17
PMS1-220ENST00000618056 CHRNA2Q15822 529 aa34.83■■■■□ 3.17
PMS1-220ENST00000618056 USP31Q70CQ4 1352 aa34.8■■■■□ 3.16
PMS1-220ENST00000618056 SUGP2Q8IX01 1082 aaKnown RBP eCLIP34.79■■■■□ 3.16
PMS1-220ENST00000618056 EIF4G2P78344 907 aaKnown RBP eCLIP34.78■■■■□ 3.16
PMS1-220ENST00000618056 ANKRD36BQ8N2N9 1353 aa34.78■■■■□ 3.16
PMS1-220ENST00000618056 CCDC9Q9Y3X0 531 aaKnown RBP34.78■■■■□ 3.16
PMS1-220ENST00000618056 CAMTA1Q9Y6Y1 1673 aa34.77■■■■□ 3.16
PMS1-220ENST00000618056 EP400Q96L91 3159 aa34.77■■■■□ 3.16
PMS1-220ENST00000618056 KCNH5Q8NCM2 988 aa34.77■■■■□ 3.16
PMS1-220ENST00000618056 ONECUT3O60422 494 aaPredicted RBP34.76■■■■□ 3.15
PMS1-220ENST00000618056 MYOM1P52179 1685 aa34.75■■■■□ 3.15
PMS1-220ENST00000618056 BRWD3Q6RI45 1802 aa34.75■■■■□ 3.15
PMS1-220ENST00000618056 COL18A1P39060 1754 aa34.75■■■■□ 3.15
PMS1-220ENST00000618056 SPATA31A5Q5VU36 1347 aa34.74■■■■□ 3.15
PMS1-220ENST00000618056 SPATA31A7Q8IWB4 1347 aa34.74■■■■□ 3.15
PMS1-220ENST00000618056 NME9Q86XW9 330 aa34.74■■■■□ 3.15
PMS1-220ENST00000618056 NFAT5O94916 1531 aa34.74■■■■□ 3.15
PMS1-220ENST00000618056 AATKQ6ZMQ8 1374 aa34.73■■■■□ 3.15
PMS1-220ENST00000618056 HSPA5P11021 654 aaKnown RBP34.71■■■■□ 3.15
PMS1-220ENST00000618056 ZRANB1Q9UGI0 708 aa34.71■■■■□ 3.15
PMS1-220ENST00000618056 ARHGEF25Q86VW2 580 aa34.69■■■■□ 3.14
PMS1-220ENST00000618056 UPF1Q92900 1129 aaKnown RBP eCLIP34.69■■■■□ 3.14
PMS1-220ENST00000618056 STRN4Q9NRL3 753 aa34.69■■■■□ 3.14
PMS1-220ENST00000618056 COL5A2P05997 1499 aaPredicted RBP34.68■■■■□ 3.14
PMS1-220ENST00000618056 OVOS2A0A0J9YW53 1432 aa34.67■■■■□ 3.14
PMS1-220ENST00000618056 OVOS2Q6IE36 1432 aa34.67■■■■□ 3.14
PMS1-220ENST00000618056 SEPT12Q8IYM1 358 aa34.67■■■■□ 3.14
PMS1-220ENST00000618056 SPATA31A1Q5TZJ5 1347 aa34.67■■■■□ 3.14
PMS1-220ENST00000618056 EVA1CP58658 441 aa34.66■■■■□ 3.14
PMS1-220ENST00000618056 RGPD5Q99666 1765 aa34.66■■■■□ 3.14
PMS1-220ENST00000618056 ABCC6O95255 1503 aa34.65■■■■□ 3.14
PMS1-220ENST00000618056 LTN1O94822 1766 aa34.64■■■■□ 3.14
PMS1-220ENST00000618056 FAM98CQ17RN3 349 aaKnown RBP34.64■■■■□ 3.14
PMS1-220ENST00000618056 THSD7AQ9UPZ6 1657 aa34.64■■■■□ 3.14
PMS1-220ENST00000618056 ZBTB7CA1YPR0 619 aa34.63■■■■□ 3.13
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms